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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00440
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00440
Identity
- Kingdom:
- phage
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-257
Domain cluster:
rep: MG592611.1__AUR98070.1__NVP1246O_63__00063__D4-90
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b0xA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.87 | 76.0 | 7.59e-01 | 100.0% | 90.5% |
| 2w9mB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.83 | 62.0 | 6.91e-01 | 97.1% | 98.8% |
| 5hr9A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.83 | 74.0 | 7.38e-01 | 96.1% | 97.2% |
| 3oguA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.81 | 76.0 | 7.11e-01 | 100.0% | 94.3% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.81 | 72.0 | 6.91e-01 | 95.1% | 100.0% |
| 2bcqA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.81 | 75.0 | 7.05e-01 | 100.0% | 91.9% |
| 6fgjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.80 | 74.0 | 6.42e-01 | 99.0% | 95.3% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.77 | 69.0 | 6.67e-01 | 97.1% | 99.1% |
| 4xq7A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.76 | 70.0 | 5.99e-01 | 99.0% | 84.0% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.76 | 70.0 | 6.51e-01 | 100.0% | 90.4% |
| 4ebjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.76 | 59.0 | 5.49e-01 | 100.0% | 66.4% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.75 | 69.0 | 5.83e-01 | 100.0% | 64.2% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.72 | 28.0 | 3.51e-01 | 87.4% | 55.2% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.72 | 65.0 | 6.42e-01 | 98.1% | 97.2% |
| 1r89A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.72 | 65.0 | 6.08e-01 | 100.0% | 88.3% |
| 3hj4A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.72 | 65.0 | 6.02e-01 | 100.0% | 90.8% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.71 | 65.0 | 5.94e-01 | 100.0% | 91.9% |
| 4s3nA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.71 | 64.0 | 5.68e-01 | 100.0% | 86.4% |
| 1vj7B02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 63.0 | 6.02e-01 | 97.1% | 92.4% |
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.68 | 48.0 | 4.68e-01 | 93.2% | 66.1% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.68 | 58.0 | 5.76e-01 | 96.1% | 88.0% |
| 2fclA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.67 | 61.0 | 5.26e-01 | 99.0% | 71.2% |
| 3wfoA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 57.0 | 4.94e-01 | 94.2% | 66.2% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.66 | 58.0 | 4.49e-01 | 100.0% | 89.4% |
| 4wqkA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.66 | 58.0 | 4.88e-01 | 97.1% | 60.0% |
| 1ml8A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 55.0 | 5.65e-01 | 97.1% | 99.0% |
| 1zswA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 44.0 | 3.88e-01 | 72.8% | 92.7% |
| 1kw3B02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 46.0 | 4.03e-01 | 77.7% | 87.7% |
| 3p8aA02 | 2.60.40.4320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 38.0 | 4.00e-01 | 99.0% | 68.9% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 45.0 | 3.98e-01 | 77.7% | 88.0% |
| 1sp8C01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 47.0 | 3.96e-01 | 83.5% | 88.0% |
| 1sqiA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 47.0 | 3.99e-01 | 83.5% | 87.4% |
| 3e0rB01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 42.0 | 4.03e-01 | 75.7% | 100.0% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 41.0 | 3.74e-01 | 72.8% | 100.0% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 35.0 | 3.70e-01 | 96.1% | 68.5% |
| 4gafB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 3.78e-01 | 92.2% | 67.3% |
| 6h1bA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.54 | 42.0 | 4.22e-01 | 99.0% | 83.3% |
| 3ghjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 46.0 | 4.43e-01 | 95.1% | 92.2% |
| 1twuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 47.0 | 4.28e-01 | 98.1% | 88.3% |
| 6fgcA01 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.53 | 46.0 | 3.93e-01 | 100.0% | 75.1% |
| 3vl9B00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.52 | 43.0 | 3.40e-01 | 90.3% | 67.0% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.52 | 34.0 | 2.87e-01 | 100.0% | 37.0% |
| 3qpbF00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 40.0 | 3.08e-01 | 86.4% | 66.9% |
| 6k5gA01 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 41.0 | 3.09e-01 | 88.3% | 51.7% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957215 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.90 | 75.0 | 6.19e-01 | 100.0% | 52.9% |
| 4263916 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.90 | 81.0 | 6.50e-01 | 100.0% | 53.9% |
| 4963116 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.88 | 77.0 | 6.11e-01 | 100.0% | 49.5% |
| 1240966 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.87 | 77.0 | 6.12e-01 | 100.0% | 50.8% |
| 1952984 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.83 | 78.0 | 6.38e-01 | 100.0% | 61.0% |
| 1952982 | 316.1.1.4 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2,DNA_pol_B_thumb | 0.83 | 78.0 | 6.35e-01 | 100.0% | 60.7% |
| 3733909 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.79 | 73.0 | 5.40e-01 | 100.0% | 56.9% |
| 5077927 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.78 | 71.0 | 6.20e-01 | 100.0% | 82.6% |
| 4039160 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.77 | 71.0 | 6.27e-01 | 100.0% | 84.8% |
| 4150338 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.77 | 71.0 | 6.13e-01 | 100.0% | 80.0% |
| 4994516 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.77 | 70.0 | 6.06e-01 | 100.0% | 83.2% |
| 4996904 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.77 | 70.0 | 6.55e-01 | 98.1% | 88.8% |
| 5028843 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.75 | 52.0 | 5.26e-01 | 92.2% | 70.5% |
| 6824 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.75 | 70.0 | 6.16e-01 | 100.0% | 85.5% |
| 4928718 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.75 | 68.0 | 6.09e-01 | 100.0% | 82.8% |
| 4998667 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.74 | 69.0 | 6.20e-01 | 98.1% | 93.3% |
| 4953678 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.73 | 66.0 | 6.26e-01 | 97.1% | 90.0% |
| 5054115 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.73 | 56.0 | 5.61e-01 | 97.1% | 79.0% |
| 5054759 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.73 | 67.0 | 6.02e-01 | 100.0% | 82.1% |
| 3929556 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.72 | 45.0 | 3.66e-01 | 100.0% | 35.1% |
| 4816291 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.72 | 64.0 | 4.87e-01 | 100.0% | 90.4% |
| 5058410 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.70 | 58.0 | 5.83e-01 | 99.0% | 86.7% |
| 5032234 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.69 | 58.0 | 5.70e-01 | 100.0% | 84.5% |
| 3721514 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.69 | 63.0 | 4.85e-01 | 100.0% | 98.7% |
| 5079184 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.69 | 64.0 | 5.09e-01 | 100.0% | 55.9% |
| 5069234 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.69 | 59.0 | 4.99e-01 | 97.1% | 56.1% |
| 4990267 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.69 | 61.0 | 4.95e-01 | 96.1% | 55.9% |
| 5041752 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.69 | 56.0 | 5.49e-01 | 100.0% | 80.5% |
| 4934391 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.68 | 57.0 | 5.58e-01 | 100.0% | 83.6% |
| 5078572 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.68 | 61.0 | 5.29e-01 | 95.1% | 68.7% |
| 5078939 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.68 | 62.0 | 5.37e-01 | 99.0% | 69.7% |
| 4969835 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.68 | 57.0 | 5.56e-01 | 99.0% | 83.6% |
| 4972768 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 60.0 | 4.39e-01 | 99.0% | 37.5% |
| 5068883 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.68 | 57.0 | 5.34e-01 | 99.0% | 75.2% |
| 4156614 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.67 | 57.0 | 5.23e-01 | 97.1% | 70.4% |
| 5029780 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.67 | 61.0 | 5.48e-01 | 100.0% | 77.9% |
| 4323659 | 211.1.1.54 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF27226 | 0.67 | 52.0 | 5.43e-01 | 92.2% | 89.5% |
| 6828 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.67 | 61.0 | 5.25e-01 | 99.0% | 70.7% |
| 4993629 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.67 | 51.0 | 4.82e-01 | 97.1% | 67.2% |
| 5041862 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.66 | 48.0 | 4.61e-01 | 100.0% | 65.8% |
| 5013444 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.66 | 53.0 | 5.07e-01 | 100.0% | 74.2% |
| 3726440 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.66 | 59.0 | 4.84e-01 | 99.0% | 54.6% |
| 5035610 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.66 | 59.0 | 4.63e-01 | 100.0% | 47.7% |
| 5057945 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 56.0 | 5.01e-01 | 93.2% | 95.2% |
| 3179417 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 57.0 | 5.57e-01 | 97.1% | 91.3% |
| 5011354 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.65 | 56.0 | 4.67e-01 | 100.0% | 54.1% |
| 5080470 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.64 | 57.0 | 4.42e-01 | 100.0% | 47.7% |
| 3285546 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.64 | 46.0 | 4.57e-01 | 75.7% | 99.1% |
| 3424253 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 49.0 | 4.12e-01 | 80.6% | 60.6% |
| 4495995 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.63 | 54.0 | 5.03e-01 | 98.1% | 74.6% |
| 4995864 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.63 | 44.0 | 3.64e-01 | 98.1% | 42.3% |
| 4958430 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 56.0 | 4.30e-01 | 100.0% | 47.9% |
| 3848075 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 43.0 | 3.38e-01 | 98.1% | 37.7% |
| 4224302 | 316.1.1.54 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RlaP | 0.57 | 42.0 | 4.09e-01 | 77.7% | 70.0% |
| 4934718 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.57 | 52.0 | 3.99e-01 | 99.0% | 59.5% |
| 3929875 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 40.0 | 4.26e-01 | 85.4% | 90.3% |
| 4941640 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 40.0 | 3.52e-01 | 87.4% | 54.8% |
| 3786890 | 874.1.1.0 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain | 0.51 | 44.0 | 3.67e-01 | 99.0% | 62.1% |
| 5043017 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.50 | 45.0 | 4.31e-01 | 98.1% | 100.0% |
D2
high
residues 267-324
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14791.12 best | DNA_pol_B_thumb | 57.2 | 1.80e-15 | 100.0% | 84.1% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3au2A04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.95 | 80.0 | 7.70e-01 | 100.0% | 80.0% |
| 2bcqA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.90 | 83.0 | 7.92e-01 | 100.0% | 95.5% |
| 2w9mA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.89 | 64.0 | 6.63e-01 | 86.2% | 80.0% |
| 4p4mA03 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.89 | 82.0 | 6.89e-01 | 100.0% | 81.5% |
| 1bpeA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.87 | 78.0 | 7.76e-01 | 98.3% | 96.6% |
| 5hr9A02 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.78 | 65.0 | 6.19e-01 | 100.0% | 78.3% |
| 1jiwI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 49.0 | 4.07e-01 | 84.5% | 95.2% |
| 2nnwA01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 41.0 | 3.26e-01 | 72.4% | 95.9% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.58 | 45.0 | 4.36e-01 | 87.9% | 86.4% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 41.0 | 3.65e-01 | 75.9% | 100.0% |
| 7atrA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.57 | 49.0 | 3.21e-01 | 94.8% | 62.7% |
| 6hgcA01 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.57 | 42.0 | 3.05e-01 | 82.8% | 77.0% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.57 | 43.0 | 3.64e-01 | 82.8% | 58.4% |
| 2jj6A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 3.31e-01 | 82.8% | 86.6% |
| 6accA01 | 2.60.120.960 | Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain | 0.57 | 40.0 | 2.65e-01 | 75.9% | 93.7% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 42.0 | 3.15e-01 | 100.0% | 31.1% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.57 | 43.0 | 3.56e-01 | 84.5% | 85.7% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 44.0 | 3.79e-01 | 87.9% | 89.9% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.56 | 43.0 | 3.55e-01 | 89.7% | 82.4% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.55 | 44.0 | 4.42e-01 | 87.9% | 87.9% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 46.0 | 2.95e-01 | 98.3% | 71.2% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 41.0 | 3.97e-01 | 84.5% | 72.5% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 3.89e-01 | 98.3% | 55.1% |
| 3fysA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.54 | 41.0 | 3.27e-01 | 84.5% | 57.4% |
| 3lvuB00 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.54 | 45.0 | 2.99e-01 | 94.8% | 62.3% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.54 | 39.0 | 3.62e-01 | 81.0% | 83.5% |
| 3nytA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 43.0 | 3.42e-01 | 87.9% | 91.3% |
| 1nktA02 | 3.90.1440.10 | Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain | 0.53 | 38.0 | 3.02e-01 | 79.3% | 36.1% |
| 3k9dA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.52 | 41.0 | 3.05e-01 | 98.3% | 29.7% |
| 2b02A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 36.0 | 3.02e-01 | 72.4% | 57.7% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.52 | 44.0 | 3.27e-01 | 96.6% | 62.9% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.52 | 35.0 | 3.27e-01 | 75.9% | 54.7% |
| 5j3tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.32e-01 | 94.8% | 96.8% |
| 3kkjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 3.02e-01 | 87.9% | 93.5% |
| 4cy8A03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.51 | 37.0 | 2.85e-01 | 81.0% | 45.6% |
| 6s9vB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 36.0 | 2.24e-01 | 75.9% | 23.8% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 3.36e-01 | 82.8% | 98.9% |
| 6xl1A01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.50 | 40.0 | 3.01e-01 | 89.7% | 81.9% |
| 2frxA02 | 3.10.450.720 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 2.91e-01 | 87.9% | 39.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963116 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.93 | 88.0 | 5.85e-01 | 100.0% | 33.7% |
| 3276647 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.92 | 85.0 | 5.75e-01 | 100.0% | 31.2% |
| 3726426 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.91 | 85.0 | 5.57e-01 | 100.0% | 30.5% |
| 4951202 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.89 | 77.0 | 5.49e-01 | 100.0% | 34.8% |
| 3610425 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.89 | 80.0 | 5.17e-01 | 100.0% | 24.6% |
| 151074 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.88 | 81.0 | 5.44e-01 | 100.0% | 29.6% |
| 3453703 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.88 | 80.0 | 5.39e-01 | 100.0% | 32.2% |
| 3716929 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.87 | 80.0 | 5.07e-01 | 98.3% | 31.8% |
| 3594958 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.83 | 71.0 | 4.66e-01 | 100.0% | 23.4% |
| 3936594 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 48.0 | 4.67e-01 | 86.2% | 80.0% |
| 3953675 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.62 | 50.0 | 4.83e-01 | 87.9% | 100.0% |
| 3478678 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 45.0 | 4.14e-01 | 81.0% | 81.3% |
| 3175445 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.60 | 46.0 | 3.18e-01 | 87.9% | 56.0% |
| 3990856 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 48.0 | 3.68e-01 | 91.4% | 80.7% |
| 3470049 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.58 | 40.0 | 2.25e-01 | 70.7% | 94.3% |
| 5830 | 330.7.1.1 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 | 0.58 | 45.0 | 4.36e-01 | 87.9% | 86.4% |
| 3913314 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.58 | 43.0 | 3.51e-01 | 82.8% | 89.2% |
| 3716968 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.58 | 39.0 | 2.20e-01 | 70.7% | 91.3% |
| 3311716 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.58 | 45.0 | 3.50e-01 | 86.2% | 86.9% |
| 3867392 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.57 | 48.0 | 3.06e-01 | 94.8% | 62.9% |
| 3379426 | 4205.1.1.0 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like | 0.57 | 47.0 | 3.33e-01 | 96.6% | 59.3% |
| 3859170 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.57 | 48.0 | 3.73e-01 | 94.8% | 77.4% |
| 3439608 | 5.1.4.219 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N | 0.57 | 47.0 | 2.93e-01 | 100.0% | 26.9% |
| 3903484 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.57 | 44.0 | 3.67e-01 | 87.9% | 79.1% |
| 5036089 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.57 | 40.0 | 3.17e-01 | 75.9% | 96.8% |
| 5017022 | 331.1.1.27 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS | 0.56 | 47.0 | 3.08e-01 | 98.3% | 27.7% |
| 5013411 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.55 | 39.0 | 3.19e-01 | 75.9% | 98.3% |
| 3777243 | 220.1.1.161 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 | 0.55 | 41.0 | 3.21e-01 | 82.8% | 70.4% |
| 3797675 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 44.0 | 3.12e-01 | 96.6% | 60.9% |
| 4946976 | 3407.1.1.5 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.54 | 38.0 | 2.95e-01 | 75.9% | 93.8% |
| 4237290 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.53 | 37.0 | 2.96e-01 | 75.9% | 36.5% |
| 4011407 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 41.0 | 3.23e-01 | 86.2% | 57.7% |
| 3748744 | 12.3.1.52 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF30771 | 0.52 | 41.0 | 2.85e-01 | 87.9% | 25.1% |
| 3955729 | 150.8.1.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PF29644 | 0.52 | 46.0 | 3.33e-01 | 98.3% | 35.8% |
| 3641060 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.52 | 40.0 | 3.15e-01 | 87.9% | 85.9% |
| 3702168 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.52 | 43.0 | 2.45e-01 | 100.0% | 29.7% |
| 4022821 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.21e-01 | 98.3% | 74.8% |
| 4526547 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.51 | 40.0 | 3.19e-01 | 96.6% | 41.7% |
| 4023242 | 220.1.1.187 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C | 0.51 | 41.0 | 3.35e-01 | 94.8% | 87.2% |
| 2717225 | 7592.1.1.8 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 | 0.50 | 40.0 | 2.99e-01 | 89.7% | 79.4% |
| 5045224 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 37.0 | 3.38e-01 | 82.8% | 82.4% |
| 3696153 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.50 | 44.0 | 2.79e-01 | 100.0% | 87.3% |
D3
medium
residues 1-98
Domain cluster:
rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00053__D3-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14716.14 best | HHH_8 | 35.4 | 1.60e-08 | 74.5% | 97.3% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b0xA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.90 | 73.0 | 7.71e-01 | 83.7% | 100.0% |
| 2w9mB01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.87 | 70.0 | 7.44e-01 | 83.7% | 97.7% |
| 4i2aA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.81 | 65.0 | 6.71e-01 | 91.8% | 89.4% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 45.0 | 5.29e-01 | 72.4% | 95.5% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 46.0 | 3.84e-01 | 74.5% | 43.5% |
| 5z7cA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.63 | 52.0 | 4.40e-01 | 93.9% | 93.8% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 50.0 | 3.78e-01 | 87.8% | 95.9% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.62 | 42.0 | 4.34e-01 | 74.5% | 72.6% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 41.0 | 4.52e-01 | 83.7% | 90.5% |
| 7sf7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 50.0 | 3.65e-01 | 88.8% | 91.5% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.60 | 45.0 | 4.42e-01 | 79.6% | 77.1% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 42.0 | 3.78e-01 | 72.4% | 63.1% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.60 | 43.0 | 4.07e-01 | 82.7% | 62.2% |
| 2e8gA01 | 1.20.1440.150 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.59 | 49.0 | 4.55e-01 | 90.8% | 86.3% |
| 7f16R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 49.0 | 3.60e-01 | 100.0% | 71.1% |
| 4gycA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 47.0 | 3.72e-01 | 98.0% | 77.7% |
| 5xnyA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 42.0 | 4.16e-01 | 84.7% | 84.1% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 49.0 | 3.50e-01 | 100.0% | 62.5% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 41.0 | 4.15e-01 | 80.6% | 100.0% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 38.0 | 4.12e-01 | 87.8% | 91.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 38.0 | 3.30e-01 | 86.7% | 48.0% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 38.0 | 3.91e-01 | 74.5% | 98.9% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 45.0 | 3.56e-01 | 98.0% | 100.0% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.53 | 42.0 | 3.77e-01 | 88.8% | 84.7% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.52 | 37.0 | 3.88e-01 | 81.6% | 86.9% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.52 | 42.0 | 3.67e-01 | 89.8% | 86.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5072866 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.94 | 76.0 | 8.15e-01 | 83.7% | 100.0% |
| 4033987 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.92 | 73.0 | 8.09e-01 | 81.6% | 100.0% |
| 4945748 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.87 | 73.0 | 7.59e-01 | 87.8% | 98.9% |
| 5076953 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.86 | 72.0 | 7.76e-01 | 95.9% | 100.0% |
| 3259835 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.86 | 64.0 | 6.99e-01 | 78.6% | 93.8% |
| 3726429 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.84 | 71.0 | 7.25e-01 | 91.8% | 91.6% |
| 4142133 | 133.1.1.7 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › PF28625 | 0.70 | 50.0 | 4.16e-01 | 73.5% | 77.6% |
| 1309041 | 633.18.1.1 ↗ | alpha bundles › Bromodomain-like › ExoU toxin C-terminal domain › ExoU toxin C-terminal domain › ExoU_C | 0.67 | 47.0 | 5.29e-01 | 74.5% | 97.3% |
| 3993365 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.63 | 45.0 | 3.29e-01 | 74.5% | 41.5% |
| 3667299 | 592.2.1.11 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › PF31137 | 0.63 | 48.0 | 4.64e-01 | 81.6% | 83.6% |
| 3697729 | 611.7.1.0 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain | 0.62 | 51.0 | 4.10e-01 | 87.8% | 47.6% |
| 3499788 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 49.0 | 3.39e-01 | 87.8% | 85.1% |
| 4499455 | 633.5.1.1 ↗ | alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA | 0.60 | 43.0 | 3.70e-01 | 75.5% | 60.0% |
| 5053481 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.59 | 41.0 | 4.32e-01 | 72.4% | 97.6% |
| 3227671 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.58 | 48.0 | 3.44e-01 | 89.8% | 93.9% |
| 4545635 | 1189.1.1.1 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop | 0.58 | 48.0 | 3.20e-01 | 88.8% | 84.2% |
| 3363306 | 611.7.1.16 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › PUB2_N | 0.58 | 44.0 | 3.90e-01 | 82.7% | 85.3% |
| 4001820 | 5001.1.1.63 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab | 0.58 | 40.0 | 3.43e-01 | 72.4% | 82.4% |
| 4201292 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 50.0 | 3.58e-01 | 100.0% | 64.0% |
| 3215515 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.55 | 43.0 | 4.46e-01 | 82.7% | 91.1% |
| 3560739 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 48.0 | 3.44e-01 | 99.0% | 63.3% |
| 3935704 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 49.0 | 3.33e-01 | 100.0% | 71.6% |
| 3184071 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.54 | 44.0 | 3.67e-01 | 88.8% | 67.4% |
| 3177312 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.54 | 45.0 | 3.99e-01 | 88.8% | 83.6% |
| 3610343 | 1189.1.1.1 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop | 0.54 | 42.0 | 2.89e-01 | 84.7% | 67.4% |
| 3215416 | 5001.1.1.63 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab | 0.53 | 48.0 | 3.31e-01 | 100.0% | 67.4% |
| 3486684 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 46.0 | 3.30e-01 | 99.0% | 65.7% |
| 3493622 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 46.0 | 3.28e-01 | 99.0% | 64.7% |
| 3478250 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 46.0 | 3.23e-01 | 99.0% | 67.9% |
| 3595135 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.53 | 44.0 | 4.37e-01 | 99.0% | 85.7% |
| 3689697 | 605.4.1.8 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › MARVEL | 0.52 | 41.0 | 4.31e-01 | 85.7% | 98.9% |
| 3783655 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.52 | 42.0 | 3.77e-01 | 89.8% | 73.8% |
| 5072101 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.52 | 35.0 | 3.38e-01 | 96.9% | 60.0% |
| 3226467 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 42.0 | 3.85e-01 | 90.8% | 80.7% |
| 3478778 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 43.0 | 3.17e-01 | 99.0% | 69.8% |
| 3465921 | 611.2.1.2 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Rx_N | 0.50 | 42.0 | 3.84e-01 | 94.9% | 92.6% |
D4
medium
residues 99-153
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.77 | 67.0 | 6.27e-01 | 100.0% | 92.6% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.74 | 63.0 | 6.32e-01 | 98.2% | 100.0% |
| 4i2aA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.68 | 58.0 | 5.76e-01 | 100.0% | 93.2% |
| 3osnA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.68 | 55.0 | 5.02e-01 | 94.5% | 72.7% |
| 2dkzA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.62 | 51.0 | 5.03e-01 | 100.0% | 100.0% |
| 2is9A02 | 1.10.238.200 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain | 0.57 | 47.0 | 4.17e-01 | 100.0% | 73.6% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.56 | 44.0 | 3.70e-01 | 94.5% | 81.8% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.54 | 39.0 | 2.85e-01 | 78.2% | 61.5% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.52 | 46.0 | 3.14e-01 | 100.0% | 36.9% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.51 | 41.0 | 4.06e-01 | 98.2% | 96.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965166 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.74 | 63.0 | 6.15e-01 | 98.2% | 96.7% |
| 3908409 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.74 | 64.0 | 5.82e-01 | 100.0% | 89.3% |
| 4944206 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.74 | 63.0 | 6.15e-01 | 100.0% | 100.0% |
| 2568242 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.73 | 61.0 | 5.99e-01 | 100.0% | 86.9% |
| 197595 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.73 | 63.0 | 6.24e-01 | 100.0% | 98.3% |
| 4364220 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 61.0 | 4.83e-01 | 100.0% | 55.8% |
| None | — | 0.71 | 61.0 | 5.27e-01 | 100.0% | 72.2% | |
| 3998341 | 102.5.1.9 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 | 0.71 | 60.0 | 5.63e-01 | 98.2% | 88.6% |
| 3286457 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 58.0 | 5.69e-01 | 100.0% | 96.7% |
| 3641047 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.67 | 56.0 | 5.08e-01 | 100.0% | 90.0% |
| 3962074 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.67 | 57.0 | 5.26e-01 | 100.0% | 84.0% |
| 3359327 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.64 | 53.0 | 5.03e-01 | 100.0% | 95.7% |
| 3614897 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 44.0 | 3.41e-01 | 100.0% | 84.4% |