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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00445
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00445
Identity
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-82
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.78 | 54.0 | 4.42e-01 | 72.9% | 67.5% |
| 6ig5A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.75 | 61.0 | 4.81e-01 | 87.1% | 81.9% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.74 | 49.0 | 5.52e-01 | 70.0% | 87.3% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.68 | 46.0 | 3.79e-01 | 70.0% | 69.4% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.67 | 56.0 | 4.99e-01 | 88.6% | 81.2% |
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.64 | 55.0 | 4.45e-01 | 95.7% | 63.2% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.63 | 44.0 | 4.78e-01 | 88.6% | 89.5% |
| 1g6hA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 48.0 | 3.25e-01 | 81.4% | 31.9% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 43.0 | 4.04e-01 | 71.4% | 77.0% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.63 | 51.0 | 4.60e-01 | 88.6% | 79.4% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 54.0 | 4.40e-01 | 98.6% | 67.6% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.63 | 46.0 | 3.96e-01 | 80.0% | 59.8% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.62 | 46.0 | 3.96e-01 | 82.9% | 60.8% |
| 4uz0A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 53.0 | 4.94e-01 | 92.9% | 75.9% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 43.0 | 4.03e-01 | 71.4% | 77.6% |
| 1dofA02 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 50.0 | 4.73e-01 | 88.6% | 74.1% |
| 2xl4A00 | 1.20.120.1420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain | 0.61 | 43.0 | 3.48e-01 | 75.7% | 50.3% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 42.0 | 3.88e-01 | 71.4% | 76.9% |
| 4wnfA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 43.0 | 3.01e-01 | 77.1% | 20.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 42.0 | 3.91e-01 | 71.4% | 75.0% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.61 | 53.0 | 5.11e-01 | 100.0% | 96.3% |
| 2n7zA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 54.0 | 4.69e-01 | 100.0% | 68.9% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 45.0 | 4.57e-01 | 81.4% | 89.7% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.60 | 47.0 | 3.77e-01 | 85.7% | 93.6% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 35.0 | 3.82e-01 | 98.6% | 73.2% |
| 2o5iN05 | 1.10.40.90 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.59 | 41.0 | 4.48e-01 | 77.1% | 98.1% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 38.0 | 3.61e-01 | 100.0% | 56.6% |
| 2bl7A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.58 | 50.0 | 4.83e-01 | 100.0% | 100.0% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 4.37e-01 | 87.1% | 90.9% |
| 1io1A01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.56 | 41.0 | 3.10e-01 | 75.7% | 57.4% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.56 | 44.0 | 3.67e-01 | 85.7% | 88.8% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 47.0 | 4.57e-01 | 94.3% | 98.7% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 46.0 | 3.65e-01 | 90.0% | 80.9% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 39.0 | 4.14e-01 | 72.9% | 91.8% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.47e-01 | 100.0% | 82.4% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 34.0 | 3.39e-01 | 98.6% | 61.1% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 41.0 | 3.77e-01 | 82.9% | 85.4% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 43.0 | 3.67e-01 | 91.4% | 76.8% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.54 | 41.0 | 4.41e-01 | 100.0% | 100.0% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 42.0 | 4.07e-01 | 97.1% | 74.7% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 46.0 | 4.22e-01 | 95.7% | 94.4% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 48.0 | 3.10e-01 | 100.0% | 97.5% |
| 2zdsB00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 45.0 | 2.97e-01 | 95.7% | 54.7% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 45.0 | 3.34e-01 | 97.1% | 91.2% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 44.0 | 4.43e-01 | 98.6% | 100.0% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 37.0 | 3.60e-01 | 75.7% | 81.0% |
| 1v63A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 38.0 | 3.34e-01 | 77.1% | 53.5% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 4.05e-01 | 94.3% | 100.0% |
| 2xrhA00 | 1.20.120.1430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle | 0.50 | 43.0 | 3.86e-01 | 97.1% | 82.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952457 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.78 | 55.0 | 6.18e-01 | 77.1% | 94.5% |
| 3277930 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.76 | 51.0 | 5.98e-01 | 70.0% | 100.0% |
| 3431353 | 1128.1.1.10 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C | 0.74 | 54.0 | 5.42e-01 | 75.7% | 81.4% |
| 4932431 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.70 | 48.0 | 3.95e-01 | 71.4% | 41.2% |
| 4993857 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.69 | 60.0 | 5.76e-01 | 98.6% | 90.0% |
| 5078343 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.68 | 48.0 | 5.03e-01 | 74.3% | 82.8% |
| 3727213 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 40.0 | 4.20e-01 | 100.0% | 64.6% |
| 4494528 | 632.2.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 | 0.65 | 46.0 | 5.10e-01 | 74.3% | 96.4% |
| 4957968 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.65 | 45.0 | 3.64e-01 | 74.3% | 46.4% |
| 4973407 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.64 | 47.0 | 5.06e-01 | 81.4% | 100.0% |
| 5042923 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 53.0 | 4.55e-01 | 95.7% | 80.9% |
| 3873232 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.62 | 51.0 | 4.93e-01 | 90.0% | 80.0% |
| 3219872 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.62 | 46.0 | 3.71e-01 | 80.0% | 78.6% |
| 3410442 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.62 | 40.0 | 3.32e-01 | 90.0% | 36.8% |
| 5049352 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.62 | 52.0 | 4.75e-01 | 100.0% | 95.0% |
| 4473504 | 304.136.1.3 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII | 0.61 | 38.0 | 3.46e-01 | 100.0% | 47.8% |
| 4263712 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.60 | 42.0 | 3.83e-01 | 74.3% | 68.4% |
| 4462943 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.59 | 42.0 | 3.88e-01 | 74.3% | 74.4% |
| 3619314 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.58 | 43.0 | 3.85e-01 | 78.6% | 81.0% |
| 4096174 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.57 | 45.0 | 4.09e-01 | 98.6% | 62.8% |
| 3646179 | 4030.1.1.20 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ovate | 0.57 | 38.0 | 4.15e-01 | 94.3% | 87.3% |
| 3205696 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.57 | 47.0 | 3.73e-01 | 88.6% | 68.1% |
| 4564645 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.56 | 46.0 | 3.73e-01 | 87.1% | 62.4% |
| 3506838 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.55 | 39.0 | 3.51e-01 | 74.3% | 61.1% |
| 3798435 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.55 | 40.0 | 3.73e-01 | 77.1% | 86.7% |
| 4566374 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.55 | 40.0 | 4.00e-01 | 80.0% | 77.3% |
| 4257656 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.54 | 46.0 | 4.24e-01 | 97.1% | 71.1% |
| 4275352 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.53 | 42.0 | 3.80e-01 | 100.0% | 62.1% |
| 3619395 | 621.1.1.2 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 | 0.53 | 44.0 | 4.19e-01 | 91.4% | 75.9% |
| 4159093 | 5050.1.1.22 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like | 0.53 | 44.0 | 3.39e-01 | 100.0% | 83.2% |
| 5059337 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.53 | 39.0 | 3.20e-01 | 80.0% | 41.3% |
| 3470186 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.53 | 38.0 | 3.51e-01 | 75.7% | 71.1% |
| 3343870 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.53 | 37.0 | 2.86e-01 | 74.3% | 36.1% |
| 3643435 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.52 | 41.0 | 2.74e-01 | 87.1% | 22.1% |
| 3177431 | 101.1.1.94 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Reb1_MybAD | 0.52 | 39.0 | 3.91e-01 | 100.0% | 80.0% |
| 5027801 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.51 | 39.0 | 3.48e-01 | 85.7% | 69.5% |