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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00479
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00479
Identity
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-76
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bkcE00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.67 | 38.0 | 2.58e-01 | 84.0% | 16.0% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 49.0 | 4.20e-01 | 94.7% | 73.6% |
| 3vusB00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.51 | 38.0 | 2.62e-01 | 78.7% | 32.0% |
| 1pyiA01 | 4.10.240.10 | Few Secondary Structures › Irregular › CD2-Gal4 › Zn(2)-C6 fungal-type DNA-binding domain | 0.51 | 37.0 | 4.07e-01 | 86.7% | 95.2% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 36.0 | 3.08e-01 | 76.0% | 85.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3801981 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 47.0 | 4.38e-01 | 72.0% | 89.2% |
| 3803107 | 376.1.2.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2, C1-like_CT | 0.62 | 44.0 | 3.07e-01 | 74.7% | 66.4% |
| 3821671 | 376.1.1.63 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 | 0.62 | 44.0 | 3.73e-01 | 74.7% | 63.2% |
| 4959094 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 35.0 | 3.97e-01 | 70.7% | 80.0% |
| 3812458 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.58 | 44.0 | 3.43e-01 | 82.7% | 76.5% |
| 3194132 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.57 | 38.0 | 2.92e-01 | 86.7% | 29.7% |
| 3361724 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.55 | 42.0 | 3.99e-01 | 84.0% | 73.3% |
| 3819551 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.53 | 43.0 | 2.97e-01 | 93.3% | 89.5% |
| 4245473 | 375.10.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 | 0.53 | 37.0 | 3.79e-01 | 73.3% | 80.0% |