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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00490
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00490
Identity
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-81
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3on4D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.83 | 59.0 | 4.08e-01 | 73.0% | 61.1% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.81 | 43.0 | 3.70e-01 | 90.5% | 34.4% |
| 1ss3A00 | 1.10.287.720 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 | 0.74 | 44.0 | 4.88e-01 | 73.0% | 76.0% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 56.0 | 3.96e-01 | 96.8% | 36.6% |
| 3p0hB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 49.0 | 3.14e-01 | 84.1% | 73.0% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.58 | 45.0 | 4.07e-01 | 84.1% | 78.4% |
| 2cyaA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.58 | 39.0 | 3.24e-01 | 71.4% | 83.7% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.51 | 40.0 | 3.38e-01 | 92.1% | 87.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3960067 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.81 | 56.0 | 5.40e-01 | 71.4% | 64.3% |
| 3590059 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.79 | 57.0 | 4.25e-01 | 76.2% | 32.0% |
| 3799156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 55.0 | 5.18e-01 | 73.0% | 66.2% |
| 3396806 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 53.0 | 4.70e-01 | 71.4% | 50.0% |
| 3685821 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.78 | 53.0 | 4.33e-01 | 71.4% | 39.1% |
| 3165239 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.75 | 51.0 | 3.54e-01 | 71.4% | 73.1% |
| 3228790 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.74 | 52.0 | 3.84e-01 | 74.6% | 30.0% |
| 3236421 | 616.1.1.21 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 | 0.72 | 52.0 | 4.97e-01 | 77.8% | 65.3% |
| 4934635 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.68 | 56.0 | 3.70e-01 | 92.1% | 55.5% |
| 3255785 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.59 | 40.0 | 3.32e-01 | 73.0% | 40.0% |
| 5070459 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.58 | 40.0 | 2.93e-01 | 77.8% | 25.6% |