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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00495
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00495
Identity
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-76
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.67 | 55.0 | 5.67e-01 | 95.3% | 96.7% |
| 2e6oA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.64 | 53.0 | 4.82e-01 | 93.8% | 67.8% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 43.0 | 4.52e-01 | 100.0% | 76.3% |
| 1v63A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.62 | 48.0 | 4.19e-01 | 89.1% | 54.5% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.59 | 40.0 | 3.91e-01 | 96.9% | 64.3% |
| 5cofA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 50.0 | 3.72e-01 | 100.0% | 89.5% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.57 | 47.0 | 3.92e-01 | 98.4% | 67.7% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 47.0 | 4.49e-01 | 98.4% | 94.7% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 45.0 | 3.53e-01 | 98.4% | 64.4% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 46.0 | 3.74e-01 | 100.0% | 96.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3176953 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.66 | 56.0 | 5.49e-01 | 96.9% | 88.6% |
| 4021322 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.62 | 52.0 | 4.53e-01 | 95.3% | 62.0% |
| 3657305 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.58 | 47.0 | 4.38e-01 | 100.0% | 71.2% |
| 4458965 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.56 | 44.0 | 4.12e-01 | 84.4% | 93.8% |
| 3034622 | 101.1.1.69 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 | 0.56 | 43.0 | 3.67e-01 | 87.5% | 75.7% |