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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00502

Bact-Vir

SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00502

Identity

Kingdom:
phage

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-118
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iueA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.71 65.0 5.31e-01 100.0% 89.2%
3gybA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 43.0 4.27e-01 100.0% 58.5%
7xlqD02 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.68 62.0 5.26e-01 100.0% 71.6%
3fzeA00 3.40.50.11070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein Ste5, Fus3-binding domain 0.68 61.0 5.26e-01 100.0% 81.1%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 45.0 4.51e-01 100.0% 69.7%
3kjxA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 45.0 4.30e-01 100.0% 63.9%
3rotA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 48.0 4.54e-01 100.0% 68.6%
4meaA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 49.0 3.57e-01 100.0% 30.6%
2wj6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 48.0 4.00e-01 100.0% 47.5%
3hcwA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 44.0 4.22e-01 100.0% 63.6%
4uhcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 47.0 3.62e-01 100.0% 34.9%
1ig3A02 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.61 56.0 5.16e-01 100.0% 94.6%
1ispA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 47.0 4.11e-01 100.0% 54.7%
4inzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 47.0 3.58e-01 100.0% 34.6%
4wutA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 44.0 4.18e-01 100.0% 65.2%
3q3eA02 3.40.50.11380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 49.0 4.36e-01 100.0% 63.6%
3c8mA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 51.0 4.54e-01 100.0% 67.9%
2fexA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 45.0 3.87e-01 100.0% 52.4%
7bovA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 48.0 4.08e-01 100.0% 55.2%
4wd3A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 45.0 4.50e-01 99.1% 82.5%
2jjmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 47.0 4.05e-01 100.0% 57.5%
2qjoA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 51.0 4.31e-01 100.0% 64.3%
3q3eA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 47.0 3.99e-01 100.0% 55.5%
6yv8A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 50.0 4.08e-01 100.0% 88.2%
1f2dA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 4.57e-01 90.6% 98.0%
2e87A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.48e-01 79.5% 48.7%
3kd3A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 49.0 4.47e-01 100.0% 82.5%
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.54 48.0 3.73e-01 100.0% 92.9%
3loqA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 48.0 4.49e-01 100.0% 92.4%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 39.0 3.86e-01 77.8% 85.8%
2j48A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 41.0 4.17e-01 100.0% 83.2%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.53 42.0 4.31e-01 94.9% 89.5%
3s6dA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 43.0 3.33e-01 88.0% 87.0%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 3.95e-01 100.0% 75.0%
1gsaA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 4.45e-01 99.1% 88.3%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 46.0 4.25e-01 100.0% 98.1%
3cneA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 44.0 3.85e-01 100.0% 61.5%
4okoA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 46.0 3.51e-01 100.0% 63.1%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.52 47.0 3.77e-01 100.0% 68.1%
4ml3D00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 4.14e-01 100.0% 80.9%
1ydgA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 45.0 3.84e-01 100.0% 80.6%
5f4bA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 45.0 4.02e-01 100.0% 89.0%
1mv8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.84e-01 100.0% 76.7%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 44.0 3.78e-01 100.0% 68.0%
2gt1A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 46.0 4.10e-01 100.0% 90.8%
5ul3A01 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.50 45.0 4.09e-01 100.0% 78.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.75 69.0 5.65e-01 100.0% 80.5%
3933079 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.73 68.0 5.82e-01 100.0% 82.2%
4989225 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.73 68.0 5.59e-01 100.0% 84.5%
3852148 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.73 68.0 5.55e-01 100.0% 77.1%
3331343 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.72 66.0 6.00e-01 100.0% 82.6%
3969876 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.72 67.0 5.29e-01 100.0% 57.5%
3302952 2006.1.6.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk 0.71 66.0 5.08e-01 100.0% 92.0%
4971316 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.71 65.0 5.05e-01 100.0% 72.8%
5073395 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.71 65.0 5.34e-01 100.0% 91.7%
3933625 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.70 64.0 5.25e-01 100.0% 75.2%
3930561 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.70 64.0 5.45e-01 100.0% 69.7%
3544162 2006.1.6.22 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 0.69 63.0 5.46e-01 100.0% 87.8%
4979707 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.69 62.0 4.91e-01 100.0% 60.5%
3708162 2006.1.6.48 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF7163 0.69 62.0 5.21e-01 100.0% 76.0%
3220824 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.68 62.0 5.22e-01 100.0% 86.7%
3214873 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.68 62.0 5.30e-01 100.0% 93.0%
5000961 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.68 61.0 4.97e-01 100.0% 96.9%
3437462 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.68 61.0 5.25e-01 100.0% 88.1%
4983536 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.67 61.0 4.81e-01 100.0% 89.2%
3761562 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.66 60.0 5.23e-01 100.0% 91.4%
3817903 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.66 59.0 4.68e-01 100.0% 75.1%
3289694 2006.1.6.21 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_CoxE 0.64 58.0 5.19e-01 100.0% 89.1%
3267211 2007.1.4.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.63 56.0 3.74e-01 100.0% 29.1%
3941390 7579.1.1.92 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.61 48.0 3.72e-01 100.0% 38.4%
5074406 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.61 48.0 3.60e-01 100.0% 33.8%
4976120 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.60 43.0 4.36e-01 100.0% 73.9%
3948787 2007.2.2.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PTS_IIB 0.60 40.0 4.22e-01 100.0% 75.2%
5058254 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.60 44.0 4.00e-01 99.1% 56.3%
5084025 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.60 41.0 4.26e-01 100.0% 74.5%
3836058 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.60 54.0 5.04e-01 100.0% 92.4%
5020654 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.60 51.0 4.47e-01 100.0% 61.7%
5077204 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.59 54.0 4.80e-01 100.0% 76.4%
5071147 2007.15.1.2 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.57 44.0 4.24e-01 100.0% 71.6%
5056383 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.57 51.0 4.42e-01 100.0% 70.3%
4970072 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.56 47.0 4.11e-01 100.0% 60.0%
4025111 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.56 50.0 3.44e-01 100.0% 52.6%
3439932 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.56 50.0 4.42e-01 100.0% 77.1%
3986434 7512.1.1.8 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.56 49.0 4.06e-01 100.0% 53.5%
3839414 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.55 48.0 3.58e-01 100.0% 37.3%
4985079 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 50.0 4.77e-01 100.0% 94.8%
5043814 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.55 41.0 4.17e-01 100.0% 80.9%
4830094 3315.1.1.1 a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 0.54 45.0 3.99e-01 100.0% 60.7%
4998060 2007.22.1.1 a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D › FlpD 0.54 42.0 4.08e-01 100.0% 72.6%
3170107 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 48.0 3.90e-01 100.0% 64.3%
4966087 7516.1.1.38 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › RGP 0.54 48.0 3.43e-01 100.0% 76.1%
163644 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.53 41.0 4.17e-01 100.0% 83.2%
5002848 2007.2.2.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › LMWPc 0.52 41.0 3.90e-01 100.0% 69.7%
4964131 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.52 46.0 3.92e-01 100.0% 59.0%
3174631 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.52 46.0 3.38e-01 100.0% 51.9%
1717649 7512.1.1.7 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_9 0.52 45.0 4.03e-01 100.0% 66.7%
4481853 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.52 39.0 3.33e-01 79.5% 51.1%
3838283 7512.1.1.7 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_9 0.52 46.0 4.14e-01 99.1% 87.3%
4016767 7579.1.1.25 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FSH1 0.51 46.0 3.43e-01 100.0% 40.0%
5064254 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 38.0 3.80e-01 79.5% 82.4%
5026220 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 38.0 3.35e-01 77.8% 77.1%
3512266 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 45.0 3.70e-01 100.0% 54.6%
4514544 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 43.0 4.03e-01 93.2% 91.7%
3946483 2004.1.1.107 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.50 44.0 3.39e-01 100.0% 64.1%
4980761 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 37.0 3.48e-01 76.9% 72.9%