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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00504
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00504
Identity
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-96
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jofA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 55.0 | 3.63e-01 | 98.9% | 37.3% |
| 3c5iD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 45.0 | 4.78e-01 | 78.7% | 100.0% |
| 2qe8A00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.61 | 54.0 | 3.65e-01 | 98.9% | 47.5% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 53.0 | 3.54e-01 | 98.9% | 36.4% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 53.0 | 3.58e-01 | 98.9% | 38.8% |
| 1uyjA01 | 3.30.360.60 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.59 | 42.0 | 4.40e-01 | 76.4% | 81.7% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 46.0 | 4.68e-01 | 85.4% | 87.4% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 51.0 | 3.45e-01 | 98.9% | 36.4% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 52.0 | 3.47e-01 | 100.0% | 82.3% |
| 2pm9A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 49.0 | 3.29e-01 | 92.1% | 38.2% |
| 3g4eA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 50.0 | 3.53e-01 | 100.0% | 57.2% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 44.0 | 4.09e-01 | 85.4% | 66.4% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 49.0 | 3.37e-01 | 98.9% | 68.8% |
| 5gtqA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 49.0 | 3.44e-01 | 98.9% | 57.0% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 50.0 | 3.34e-01 | 98.9% | 60.3% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.56 | 49.0 | 3.20e-01 | 100.0% | 40.0% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 47.0 | 3.23e-01 | 92.1% | 45.5% |
| 4dnuA00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.56 | 48.0 | 3.26e-01 | 100.0% | 93.8% |
| 3bwsA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 49.0 | 3.35e-01 | 98.9% | 36.5% |
| 4o2wD00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.55 | 48.0 | 3.24e-01 | 98.9% | 39.6% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 46.0 | 3.25e-01 | 92.1% | 56.2% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 40.0 | 3.64e-01 | 75.3% | 95.0% |
| 4ozuA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 50.0 | 3.33e-01 | 100.0% | 61.1% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 49.0 | 3.33e-01 | 100.0% | 70.6% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.69e-01 | 85.4% | 88.0% |
| 3s8zA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 46.0 | 3.15e-01 | 94.4% | 61.7% |
| 4p9iA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.54 | 38.0 | 3.20e-01 | 75.3% | 56.4% |
| 2dg1C00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 47.0 | 3.19e-01 | 96.6% | 83.4% |
| 3kyaA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 47.0 | 3.15e-01 | 100.0% | 59.4% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 47.0 | 4.01e-01 | 100.0% | 96.0% |
| 1jlxA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 44.0 | 3.79e-01 | 98.9% | 92.5% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 46.0 | 3.11e-01 | 100.0% | 45.7% |
| 6p2lA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.16e-01 | 100.0% | 49.5% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 39.0 | 3.65e-01 | 85.4% | 94.0% |
| 3wa1A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 42.0 | 3.57e-01 | 95.5% | 94.4% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279798 | 2002.1.1.228 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_129 | 0.63 | 48.0 | 3.20e-01 | 83.1% | 43.0% |
| 4171484 | 5.1.4.467 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF12 | 0.61 | 52.0 | 3.30e-01 | 93.3% | 42.1% |
| 3288873 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.60 | 53.0 | 3.58e-01 | 98.9% | 37.4% |
| None | — | 0.59 | 53.0 | 3.45e-01 | 100.0% | 93.8% | |
| 3643787 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.59 | 51.0 | 3.44e-01 | 96.6% | 39.2% |
| 3190113 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 53.0 | 3.62e-01 | 98.9% | 42.6% |
| 3241917 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 51.0 | 3.62e-01 | 97.8% | 52.6% |
| 3260943 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 37.0 | 4.17e-01 | 91.0% | 82.9% |
| 3406442 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 52.0 | 3.41e-01 | 98.9% | 36.8% |
| 3924279 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.58 | 48.0 | 3.18e-01 | 91.0% | 38.4% |
| 3994906 | 5.1.3.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth | 0.58 | 48.0 | 3.35e-01 | 93.3% | 43.0% |
| 4649120 | 206.1.2.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin | 0.58 | 41.0 | 2.90e-01 | 75.3% | 88.4% |
| 3783703 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.57 | 50.0 | 3.40e-01 | 97.8% | 60.9% |
| 3290377 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.57 | 48.0 | 3.43e-01 | 92.1% | 66.3% |
| 4039417 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.57 | 50.0 | 3.54e-01 | 100.0% | 56.9% |
| 3744704 | 5.1.4.173 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd | 0.57 | 48.0 | 3.19e-01 | 92.1% | 58.6% |
| 4004174 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.57 | 49.0 | 3.41e-01 | 93.3% | 31.7% |
| None | — | 0.57 | 48.0 | 3.48e-01 | 91.0% | 71.5% | |
| 3707403 | 5.1.4.382 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 | 0.57 | 50.0 | 3.27e-01 | 97.8% | 56.9% |
| 3653889 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 49.0 | 3.39e-01 | 100.0% | 63.8% |
| 1688207 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.57 | 50.0 | 3.50e-01 | 100.0% | 57.0% |
| 3445280 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.57 | 48.0 | 3.14e-01 | 94.4% | 48.6% |
| 3332116 | 5.1.3.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N | 0.56 | 48.0 | 3.26e-01 | 93.3% | 60.3% |
| 3656948 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.56 | 48.0 | 3.25e-01 | 93.3% | 63.1% |
| 3564372 | 5.1.4.295 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_DCAF12 | 0.56 | 49.0 | 3.17e-01 | 100.0% | 32.0% |
| 3671845 | 5.1.3.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N | 0.56 | 47.0 | 3.01e-01 | 93.3% | 49.0% |
| None | — | 0.56 | 47.0 | 3.21e-01 | 92.1% | 46.5% | |
| 3945079 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.56 | 49.0 | 3.47e-01 | 100.0% | 56.9% |
| 3266906 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.56 | 50.0 | 3.48e-01 | 100.0% | 54.0% |
| 4388251 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.56 | 49.0 | 3.33e-01 | 100.0% | 53.7% |
| 3431035 | 5.1.3.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth | 0.56 | 49.0 | 3.34e-01 | 98.9% | 59.1% |
| 3648232 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 47.0 | 3.23e-01 | 96.6% | 50.6% |
| 3645923 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 3.06e-01 | 92.1% | 30.7% |
| 4616080 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.55 | 47.0 | 3.92e-01 | 97.8% | 98.2% |
| 2605149 | 5.1.3.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N | 0.55 | 49.0 | 3.40e-01 | 100.0% | 63.7% |
| 3829524 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.55 | 49.0 | 3.20e-01 | 98.9% | 57.6% |
| 3695871 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 48.0 | 3.24e-01 | 100.0% | 85.6% |
| 3934835 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 48.0 | 3.24e-01 | 97.8% | 36.7% |
| 182728 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 49.0 | 3.33e-01 | 100.0% | 70.4% |
| 1196305 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 48.0 | 3.29e-01 | 100.0% | 56.9% |
| 3735259 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 48.0 | 3.30e-01 | 100.0% | 59.4% |
| 3243074 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.54 | 34.0 | 3.80e-01 | 82.0% | 86.2% |
| 3299426 | 5.1.3.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N | 0.54 | 45.0 | 3.09e-01 | 92.1% | 71.3% |
| 3480258 | 5.1.4.467 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF12 | 0.53 | 46.0 | 3.07e-01 | 98.9% | 37.1% |
| 3993569 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 46.0 | 3.20e-01 | 98.9% | 61.2% |
| 3866143 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.53 | 45.0 | 3.18e-01 | 93.3% | 58.5% |
| 3632777 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 42.0 | 3.27e-01 | 89.9% | 55.7% |
| 3282694 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 39.0 | 3.87e-01 | 85.4% | 98.9% |
| 4478659 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.50 | 43.0 | 3.02e-01 | 96.6% | 93.3% |