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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00589

Bact-Vir

SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00589

Identity

Kingdom:
phage

Quality

69.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-122
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 43.0 3.27e-01 80.3% 28.8%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 47.0 3.13e-01 84.8% 28.0%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.61 48.0 4.17e-01 84.8% 97.0%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.61 46.0 3.55e-01 84.8% 99.4%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 48.0 3.87e-01 86.4% 91.6%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 47.0 3.71e-01 83.3% 45.9%
3oguA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 47.0 3.96e-01 89.4% 91.1%
1fg7A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 41.0 3.33e-01 72.7% 76.0%
4p4mA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 46.0 4.01e-01 89.4% 100.0%
6lpwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.59 54.0 3.84e-01 100.0% 63.1%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 45.0 3.80e-01 84.8% 60.5%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 45.0 3.05e-01 87.9% 68.7%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 43.0 3.33e-01 83.3% 57.1%
3ftbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 40.0 3.48e-01 75.8% 79.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 46.0 3.85e-01 89.4% 74.6%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 50.0 3.95e-01 100.0% 71.4%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 50.0 3.95e-01 100.0% 66.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.57 41.0 3.52e-01 75.8% 54.0%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 41.0 3.40e-01 81.8% 51.5%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 48.0 3.97e-01 95.5% 73.1%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 49.0 3.86e-01 100.0% 90.9%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 39.0 2.75e-01 77.3% 33.8%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.55 48.0 4.27e-01 100.0% 93.9%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.37e-01 86.4% 44.7%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.20e-01 90.9% 40.8%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 40.0 3.34e-01 81.8% 72.0%
1fnoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 44.0 2.92e-01 92.4% 73.6%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 44.0 3.91e-01 95.5% 77.9%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 3.67e-01 100.0% 70.1%
3w2zA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 41.0 3.07e-01 84.8% 67.4%
1s4cC00 2.60.120.370 Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL 0.54 41.0 3.22e-01 84.8% 97.3%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.60e-01 90.9% 50.8%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 41.0 3.62e-01 92.4% 70.1%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 39.0 3.68e-01 80.3% 79.8%
2gb3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 36.0 2.75e-01 71.2% 69.7%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.43e-01 87.9% 71.9%
1y44A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 35.0 2.37e-01 84.8% 17.5%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.63e-01 81.8% 97.5%
4am6A02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 43.0 3.40e-01 100.0% 42.6%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 42.0 3.33e-01 92.4% 46.2%
1f35A00 2.60.120.390 Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker 0.51 43.0 3.33e-01 100.0% 58.6%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.51 36.0 2.89e-01 78.8% 36.8%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 40.0 3.33e-01 92.4% 59.4%
1sz7A00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.50 39.0 3.06e-01 87.9% 66.7%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 34.0 2.93e-01 74.2% 66.7%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049326 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 56.0 4.60e-01 89.4% 63.2%
5052689 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.68 55.0 4.49e-01 89.4% 62.4%
5068380 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 61.0 4.84e-01 100.0% 74.6%
5050210 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 51.0 4.20e-01 83.3% 56.7%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 49.0 4.24e-01 81.8% 67.3%
4944314 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 49.0 4.05e-01 83.3% 53.6%
5044427 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 48.0 3.75e-01 80.3% 40.0%
3607162 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 55.0 4.08e-01 92.4% 58.2%
4946587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 3.93e-01 81.8% 50.8%
5079486 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 3.77e-01 83.3% 43.6%
4955757 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.98e-01 83.3% 60.0%
4928935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 4.04e-01 78.8% 74.0%
3451165 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.61 48.0 3.74e-01 87.9% 91.6%
5071984 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.69e-01 83.3% 47.9%
4975639 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 3.71e-01 81.8% 55.4%
6873 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.60 49.0 3.94e-01 92.4% 82.9%
3166618 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.60 46.0 3.59e-01 86.4% 88.1%
3592234 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 45.0 3.93e-01 81.8% 67.3%
3782077 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.60 44.0 3.48e-01 81.8% 56.1%
3704074 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.60 47.0 3.63e-01 89.4% 81.2%
4927242 223.2.1.62 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.60 45.0 3.82e-01 84.8% 65.5%
3473216 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.59 51.0 3.80e-01 93.9% 46.3%
3938063 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.59 51.0 4.07e-01 100.0% 80.0%
3400015 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.59 45.0 3.71e-01 84.8% 52.3%
5069893 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 52.0 4.11e-01 100.0% 68.6%
4929825 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 48.0 4.02e-01 92.4% 59.7%
5053041 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 3.55e-01 83.3% 43.7%
5065367 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.60e-01 84.8% 54.1%
5063840 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 43.0 3.59e-01 81.8% 56.1%
3790672 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.58 50.0 3.96e-01 100.0% 72.2%
4928263 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 46.0 4.01e-01 92.4% 67.3%
3470260 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.57 47.0 3.78e-01 92.4% 50.4%
5077835 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 45.0 3.68e-01 89.4% 45.6%
3701193 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.57 47.0 3.63e-01 89.4% 45.1%
2553536 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 43.0 3.53e-01 83.3% 52.6%
4929422 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 48.0 3.90e-01 95.5% 63.8%
4928738 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 47.0 3.89e-01 95.5% 63.3%
3249304 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.57 44.0 3.51e-01 89.4% 82.7%
4998762 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.40e-01 80.3% 51.5%
3508716 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.57 49.0 3.93e-01 100.0% 70.4%
4977402 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 46.0 3.64e-01 92.4% 48.3%
5049461 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 43.0 3.54e-01 83.3% 95.2%
4945322 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.59e-01 90.9% 84.8%
5041753 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 45.0 3.87e-01 92.4% 67.0%
5078587 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 47.0 3.81e-01 93.9% 67.7%
5065002 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 41.0 3.50e-01 83.3% 56.0%
5045484 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 44.0 3.61e-01 87.9% 77.6%
5050426 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 45.0 3.80e-01 92.4% 58.5%
4928046 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.88e-01 95.5% 66.7%
3927983 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.97e-01 92.4% 86.0%
4945960 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 47.0 3.90e-01 100.0% 71.5%
5048616 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.32e-01 86.4% 41.9%
5044707 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 41.0 3.44e-01 83.3% 56.0%
5022728 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 44.0 3.78e-01 92.4% 65.2%
4182599 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.55 44.0 3.40e-01 89.4% 83.2%
3243753 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.55 45.0 3.52e-01 90.9% 87.9%
4999612 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.55e-01 90.9% 53.8%
1124198 3789.1.1.1 ↗ beta barrels › Rubella virus capsid protein C-terminal domain › Rubella virus capsid protein C-terminal domain › Rubella virus capsid protein C-terminal domain › Rubella_Capsid 0.54 48.0 4.20e-01 100.0% 93.0%
5046999 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 46.0 3.76e-01 100.0% 73.9%
4944750 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.51e-01 90.9% 42.9%
4926979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 46.0 3.90e-01 98.5% 73.0%
5050773 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.27e-01 87.9% 93.5%
3741860 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.54 43.0 3.55e-01 92.4% 55.4%
4979823 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.56e-01 83.3% 66.0%
4024043 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.53 45.0 3.42e-01 100.0% 68.6%
4946284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.60e-01 92.4% 53.6%
5044631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.53e-01 92.4% 53.1%
5029636 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 41.0 3.61e-01 84.8% 90.9%
5083496 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.67e-01 98.5% 75.2%
3173088 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.52 44.0 3.36e-01 95.5% 50.0%
4947707 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.67e-01 100.0% 71.5%
5069834 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 43.0 3.72e-01 98.5% 77.4%
3460642 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.52 43.0 3.53e-01 100.0% 70.6%
4018116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.77e-01 100.0% 80.5%
3231733 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.51 43.0 3.50e-01 100.0% 73.6%
5047061 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.58e-01 98.5% 74.4%
5046621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.58e-01 98.5% 75.2%
4947218 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.57e-01 95.5% 68.4%
4927372 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.60e-01 95.5% 69.6%
3737473 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.51 44.0 3.38e-01 98.5% 63.9%
5016233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.46e-01 89.4% 57.4%