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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00611

Bact-Vir

SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00611

Identity

Kingdom:
phage

Quality

86.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-41_56-95_163-291
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 26.0 3.29e-01 95.7% 66.4%
5zi7A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.55 21.0 3.09e-01 81.4% 77.0%
1im3D00 2.60.40.1200 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 26.0 3.75e-01 81.4% 100.0%
6ea2A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 42.0 4.46e-01 83.3% 100.0%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 42.0 4.31e-01 84.3% 97.1%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 40.0 4.23e-01 81.0% 100.0%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 42.0 4.14e-01 84.3% 92.7%
3b34A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 41.0 4.45e-01 83.3% 100.0%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 41.0 4.16e-01 84.3% 96.7%
1d1rA00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 22.0 3.33e-01 81.0% 98.8%
5zi7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 41.0 4.34e-01 83.3% 100.0%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 26.0 3.05e-01 96.2% 67.1%
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.50 39.0 4.30e-01 81.9% 100.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008405 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.63 26.0 3.94e-01 91.9% 90.0%
3375711 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.61 27.0 3.98e-01 95.7% 93.3%
4383357 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 29.0 3.53e-01 96.7% 75.7%
5035195 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.54 37.0 4.39e-01 81.4% 100.0%
3390411 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 42.0 4.16e-01 82.4% 91.6%
3416094 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 42.0 4.13e-01 81.9% 95.0%
4967341 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.53 39.0 4.45e-01 80.0% 100.0%
3389168 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 42.0 4.24e-01 82.4% 100.0%
5043609 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 42.0 4.36e-01 83.8% 100.0%
3204667 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 42.0 4.13e-01 84.3% 99.1%
3399218 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 41.0 4.17e-01 82.4% 97.1%
3923032 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 41.0 4.10e-01 82.4% 95.9%
5031980 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 42.0 4.50e-01 84.8% 100.0%
3491854 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 42.0 4.37e-01 84.8% 99.0%
2669379 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 42.0 4.22e-01 83.8% 95.8%
3973010 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 42.0 4.39e-01 83.8% 97.9%
2814163 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 42.0 4.13e-01 84.3% 91.0%
5063745 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 42.0 4.29e-01 83.8% 98.5%
3933470 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 42.0 4.18e-01 84.3% 94.9%
3404800 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 42.0 4.15e-01 84.8% 98.6%
3700987 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.25e-01 83.8% 99.5%
3524352 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 42.0 4.23e-01 84.8% 95.7%
5064806 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 40.0 4.25e-01 80.0% 100.0%
3558379 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 42.0 4.14e-01 84.8% 92.7%
4984453 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.23e-01 81.9% 95.4%
3595343 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 42.0 4.26e-01 85.2% 96.6%
3649785 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.19e-01 84.8% 92.9%
3742853 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.51 41.0 4.30e-01 82.4% 98.9%
3189116 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 43.0 3.95e-01 89.0% 96.3%
3520927 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.09e-01 84.3% 96.8%
3313040 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 40.0 4.12e-01 81.9% 98.5%
2392511 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.25e-01 83.8% 95.4%
3783574 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.02e-01 85.2% 99.6%
3392702 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 4.10e-01 84.3% 94.9%
3172237 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.50 40.0 3.99e-01 82.9% 100.0%
5043537 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 40.0 4.34e-01 83.8% 97.2%
5067897 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 41.0 4.33e-01 83.8% 95.7%
5069410 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 39.0 4.11e-01 81.0% 92.3%
3797565 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 41.0 4.06e-01 84.8% 97.7%
141846 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.50 41.0 4.13e-01 84.8% 90.4%
3783233 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.50 40.0 4.17e-01 83.3% 100.0%
4173823 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.50 40.0 4.32e-01 82.9% 100.0%
D2 medium residues 42-55_96-162
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 41.0 3.95e-01 76.5% 90.5%
1w1oA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.57 51.0 3.66e-01 100.0% 38.2%
5zg8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 45.0 3.15e-01 95.1% 72.5%
6nrzA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 45.0 3.05e-01 95.1% 74.4%
3r3uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.81e-01 80.2% 83.2%
3a5yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 44.0 3.12e-01 95.1% 72.7%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.60e-01 76.5% 87.3%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 36.0 2.65e-01 100.0% 25.9%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 40.0 3.16e-01 81.5% 73.1%
4zj9A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.57e-01 74.1% 97.8%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.53 42.0 2.93e-01 87.7% 77.4%
1m6yA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 3.33e-01 91.4% 96.7%
1p1dA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 35.0 3.41e-01 70.4% 98.9%
4bhqA00 3.30.70.2830 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.44e-01 77.8% 84.4%
3a32A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 42.0 2.93e-01 96.3% 64.8%
1e6vA02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.30e-01 91.4% 62.3%
4up8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 40.0 2.59e-01 87.7% 75.3%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 38.0 2.71e-01 82.7% 39.7%
3d00A01 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.50 35.0 2.93e-01 74.1% 41.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403324 244.1.1.9 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.66 59.0 4.15e-01 100.0% 58.0%
3514856 1181.1.1.0 0.65 41.0 4.28e-01 100.0% 69.3%
1815425 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.62 41.0 3.84e-01 98.8% 55.0%
1644767 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 37.0 3.71e-01 98.8% 57.5%
3216105 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.59 40.0 3.63e-01 70.4% 98.3%
3475930 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 52.0 3.64e-01 100.0% 54.2%
3277920 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.59 46.0 4.00e-01 86.4% 76.2%
4143106 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 37.0 3.96e-01 75.3% 75.7%
3285209 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.57 40.0 4.22e-01 75.3% 94.5%
3395447 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.56 40.0 3.28e-01 75.3% 85.0%
4525648 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.56 42.0 3.58e-01 81.5% 72.1%
5067598 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 40.0 3.28e-01 79.0% 51.0%
3190405 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.53 39.0 3.27e-01 79.0% 81.4%
3783604 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 40.0 3.07e-01 85.2% 72.1%
3594114 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 37.0 3.45e-01 76.5% 99.1%
3948364 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 38.0 3.23e-01 76.5% 70.4%
3897876 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 37.0 2.88e-01 77.8% 89.3%
3659170 244.1.1.30 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_N 0.52 46.0 3.36e-01 100.0% 46.2%
3580171 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 34.0 3.25e-01 75.3% 56.8%
None 0.52 40.0 3.05e-01 87.7% 81.3%
3587367 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 40.0 3.25e-01 88.9% 92.7%
2754812 304.35.1.2 a+b two layers › Alpha-beta plaits › Methyl-coenzyme M reductase subunits › Methyl-coenzyme M reductase subunits › MCR_alpha_N 0.50 39.0 2.86e-01 91.4% 38.5%