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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00624
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00624
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-119
Domain cluster:
rep: OM049504.1__UIS65506.1__X__00078__D4-86
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.76 | 29.0 | 3.92e-01 | 83.9% | 65.6% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 39.0 | 4.80e-01 | 87.5% | 81.7% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 53.0 | 5.45e-01 | 94.6% | 84.8% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 38.0 | 4.36e-01 | 87.5% | 74.1% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.68 | 49.0 | 5.26e-01 | 81.2% | 88.3% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 35.0 | 4.40e-01 | 85.7% | 84.8% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.66 | 51.0 | 4.96e-01 | 97.3% | 74.4% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.66 | 51.0 | 3.70e-01 | 81.2% | 49.3% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 25.0 | 3.30e-01 | 78.6% | 67.7% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 29.0 | 3.88e-01 | 83.9% | 91.2% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 28.0 | 3.76e-01 | 78.6% | 85.2% |
| 1bifA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.58 | 41.0 | 3.30e-01 | 73.2% | 89.1% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 4.17e-01 | 87.5% | 80.2% |
| 4fd0A01 | 2.60.40.3630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 26.0 | 3.01e-01 | 71.4% | 60.8% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 47.0 | 3.95e-01 | 100.0% | 96.4% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 27.0 | 3.17e-01 | 81.2% | 73.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014686 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.80 | 38.0 | 5.37e-01 | 84.8% | 94.5% |
| 4995674 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.79 | 61.0 | 4.58e-01 | 81.2% | 53.5% |
| 4243492 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.73 | 38.0 | 5.07e-01 | 86.6% | 95.0% |
| 5043125 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.70 | 39.0 | 5.08e-01 | 85.7% | 95.4% |
| 4033432 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.70 | 38.0 | 4.95e-01 | 86.6% | 98.3% |
| 4275987 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.66 | 54.0 | 5.08e-01 | 86.6% | 91.9% |
| 3786329 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.65 | 34.0 | 4.48e-01 | 85.7% | 100.0% |
| 4399848 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.65 | 59.0 | 5.17e-01 | 100.0% | 92.7% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.62 | 55.0 | 4.15e-01 | 94.6% | 52.9% |
| 4144004 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.61 | 52.0 | 4.59e-01 | 91.1% | 83.7% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.59 | 53.0 | 3.81e-01 | 97.3% | 49.4% |
| 3605699 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.58 | 45.0 | 3.51e-01 | 83.9% | 96.0% |
| 4981913 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.56 | 45.0 | 3.35e-01 | 89.3% | 82.9% |
| 5023980 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.55 | 47.0 | 4.50e-01 | 93.8% | 91.5% |
| 3269232 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 34.0 | 3.95e-01 | 85.7% | 87.5% |
| 5029082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 45.0 | 3.89e-01 | 87.5% | 95.3% |
| 5024200 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 43.0 | 3.35e-01 | 87.5% | 89.2% |
| 4948071 | 246.2.1.11 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_3 | 0.53 | 40.0 | 3.25e-01 | 82.1% | 93.4% |
| 5022612 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 42.0 | 3.32e-01 | 88.4% | 86.7% |
| 4964125 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 40.0 | 3.12e-01 | 83.0% | 95.4% |
| 4086062 | 5.1.3.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 | 0.52 | 37.0 | 2.70e-01 | 75.0% | 76.7% |
| 3932713 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 36.0 | 2.67e-01 | 74.1% | 50.7% |
| 3499167 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 37.0 | 2.73e-01 | 76.8% | 81.1% |
| 4881743 | 5.1.2.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N | 0.51 | 37.0 | 2.44e-01 | 88.4% | 18.5% |
| 3568255 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.50 | 37.0 | 3.19e-01 | 77.7% | 84.2% |