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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00656
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00656
Identity
- Kingdom:
- phage
Quality
68.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.72 | 55.0 | 5.59e-01 | 94.6% | 83.6% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 52.0 | 3.83e-01 | 80.4% | 40.4% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 52.0 | 4.73e-01 | 83.9% | 85.1% |
| 2oqgB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 38.0 | 3.11e-01 | 100.0% | 30.6% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 38.0 | 3.08e-01 | 100.0% | 30.3% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 37.0 | 3.23e-01 | 100.0% | 35.5% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 35.0 | 3.01e-01 | 96.4% | 34.0% |
| 1jmuB02 | 1.10.2040.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 2 › Protein mu-1, chain B, domain 2 | 0.59 | 35.0 | 2.75e-01 | 96.4% | 25.8% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.59 | 49.0 | 2.91e-01 | 98.2% | 11.4% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.59 | 33.0 | 2.54e-01 | 92.9% | 23.3% |
| 4kdyB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 39.0 | 3.54e-01 | 94.6% | 48.8% |
| 2jscB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 3.47e-01 | 71.4% | 76.2% |
| 3lf7A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 42.0 | 2.60e-01 | 94.6% | 49.1% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 37.0 | 2.94e-01 | 76.8% | 35.3% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.31e-01 | 78.6% | 75.6% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.53 | 43.0 | 2.57e-01 | 98.2% | 14.5% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 29.0 | 1.98e-01 | 76.8% | 15.3% |
| 4wh5A00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.52 | 36.0 | 2.72e-01 | 73.2% | 86.7% |
| 6mptA01 | 3.30.420.590 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 35.0 | 2.64e-01 | 75.0% | 75.7% |
| 3sooA01 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.51 | 34.0 | 3.29e-01 | 100.0% | 58.0% |
| 1r1tA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.05e-01 | 98.2% | 43.9% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 36.0 | 2.56e-01 | 76.8% | 54.7% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959094 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.83 | 56.0 | 5.68e-01 | 78.6% | 70.9% |
| 3549240 | 5.1.4.253 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Gbeta | 0.77 | 51.0 | 3.01e-01 | 80.4% | 9.9% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.74 | 52.0 | 5.69e-01 | 85.7% | 93.3% |
| 3665314 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 50.0 | 5.71e-01 | 76.8% | 100.0% |
| 3743792 | 377.1.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA | 0.71 | 56.0 | 4.69e-01 | 91.1% | 50.5% |
| 3566304 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.71 | 46.0 | 5.26e-01 | 75.0% | 95.0% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.71 | 49.0 | 5.14e-01 | 80.4% | 82.0% |
| 5010149 | 377.1.1.131 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C | 0.65 | 43.0 | 4.84e-01 | 71.4% | 95.0% |
| 3873955 | 7016.1.1.0 ↗ | extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain | 0.64 | 36.0 | 2.60e-01 | 94.6% | 19.4% |
| 3787269 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 39.0 | 3.17e-01 | 100.0% | 30.9% |
| 3482328 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.64 | 38.0 | 3.13e-01 | 100.0% | 31.4% |
| 3435556 | 377.1.1.100 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RINGv | 0.63 | 47.0 | 4.97e-01 | 80.4% | 100.0% |
| 3202986 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.63 | 39.0 | 3.04e-01 | 100.0% | 27.2% |
| 4112182 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.62 | 38.0 | 3.08e-01 | 100.0% | 28.8% |
| 3688034 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.62 | 52.0 | 4.36e-01 | 96.4% | 71.0% |
| 3828336 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.62 | 37.0 | 3.01e-01 | 100.0% | 28.9% |
| 5076168 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.62 | 38.0 | 3.38e-01 | 100.0% | 40.0% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.62 | 37.0 | 2.98e-01 | 100.0% | 28.7% |
| 5083603 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.61 | 49.0 | 3.70e-01 | 89.3% | 50.0% |
| 3593339 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 36.0 | 2.91e-01 | 98.2% | 27.8% |
| 4181293 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.61 | 38.0 | 3.09e-01 | 100.0% | 30.9% |
| 3908093 | 377.9.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS | 0.61 | 43.0 | 4.56e-01 | 80.4% | 95.6% |
| 3789405 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.61 | 37.0 | 2.48e-01 | 100.0% | 14.5% |
| 2066836 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.61 | 51.0 | 4.66e-01 | 96.4% | 97.4% |
| 5035493 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.61 | 37.0 | 3.01e-01 | 100.0% | 31.4% |
| 4271212 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.60 | 37.0 | 2.95e-01 | 100.0% | 27.6% |
| 4666900 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.60 | 37.0 | 2.95e-01 | 100.0% | 27.2% |
| 4977549 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.60 | 47.0 | 4.47e-01 | 89.3% | 100.0% |
| 4995244 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 35.0 | 2.87e-01 | 100.0% | 30.0% |
| 3579472 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 36.0 | 2.82e-01 | 100.0% | 25.4% |
| 3712081 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 35.0 | 2.91e-01 | 98.2% | 30.0% |
| 3942197 | 2004.1.1.92 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KdpD | 0.58 | 36.0 | 2.41e-01 | 100.0% | 14.6% |
| 4967853 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.58 | 40.0 | 4.03e-01 | 83.9% | 74.5% |
| 3304083 | 80.1.1.0 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain | 0.57 | 35.0 | 3.23e-01 | 82.1% | 42.5% |
| 4961224 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.57 | 45.0 | 4.25e-01 | 89.3% | 100.0% |
| 3907983 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.57 | 39.0 | 4.14e-01 | 71.4% | 95.6% |
| 3559714 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.57 | 40.0 | 4.28e-01 | 78.6% | 91.1% |
| 4017372 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 35.0 | 2.88e-01 | 100.0% | 29.6% |
| 4022881 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.56 | 40.0 | 2.62e-01 | 78.6% | 85.8% |
| 3877553 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.56 | 40.0 | 3.30e-01 | 76.8% | 86.0% |
| 3922802 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.55 | 39.0 | 3.11e-01 | 76.8% | 74.2% |
| 3533128 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.55 | 40.0 | 3.20e-01 | 76.8% | 77.3% |
| 3223453 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.55 | 39.0 | 3.17e-01 | 75.0% | 80.0% |
| 3938801 | 384.1.1.0 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like | 0.55 | 37.0 | 3.78e-01 | 71.4% | 92.7% |
| 5068144 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 39.0 | 2.79e-01 | 75.0% | 86.1% |
| 151131 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.53 | 38.0 | 2.81e-01 | 75.0% | 87.3% |
| 4597621 | 150.1.2.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Phenol_Hydrox | 0.53 | 43.0 | 2.59e-01 | 98.2% | 14.2% |
| 4983405 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.52 | 37.0 | 2.76e-01 | 78.6% | 46.6% |
| 3876302 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.51 | 38.0 | 3.11e-01 | 80.4% | 69.5% |
| 3274214 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.50 | 35.0 | 2.52e-01 | 75.0% | 66.8% |
| 4933888 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.50 | 38.0 | 2.24e-01 | 83.9% | 83.4% |
| 3194944 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.50 | 43.0 | 2.90e-01 | 100.0% | 73.0% |
| 4955687 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.50 | 29.0 | 3.01e-01 | 71.4% | 56.6% |