←Back to structures
SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00663
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00663
Identity
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-77
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e6nA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 56.0 | 4.79e-01 | 98.6% | 46.2% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 55.0 | 5.40e-01 | 98.6% | 64.4% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 52.0 | 5.77e-01 | 97.1% | 86.8% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 54.0 | 5.74e-01 | 97.1% | 81.7% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 57.0 | 5.90e-01 | 97.1% | 84.4% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 54.0 | 6.07e-01 | 98.6% | 98.1% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 51.0 | 4.76e-01 | 98.6% | 59.3% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 48.0 | 5.07e-01 | 100.0% | 82.3% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 51.0 | 4.95e-01 | 100.0% | 80.0% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 51.0 | 5.25e-01 | 98.6% | 95.3% |
| 4ii1A01 | 2.30.30.1190 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 52.0 | 4.98e-01 | 98.6% | 92.5% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 45.0 | 3.57e-01 | 82.6% | 79.3% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 44.0 | 4.45e-01 | 98.6% | 86.8% |
| 4ncbA01 | 3.30.530.60 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.57 | 40.0 | 3.20e-01 | 78.3% | 35.6% |
| 1t0hA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 43.0 | 3.91e-01 | 85.5% | 69.8% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 38.0 | 2.62e-01 | 75.4% | 46.7% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 44.0 | 3.58e-01 | 100.0% | 66.4% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.52 | 38.0 | 3.16e-01 | 79.7% | 75.4% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.51 | 43.0 | 3.20e-01 | 100.0% | 50.5% |
| 5ay6A01 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.51 | 43.0 | 3.36e-01 | 100.0% | 78.9% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 40.0 | 3.23e-01 | 87.0% | 62.6% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 44.0 | 3.70e-01 | 100.0% | 61.3% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 41.0 | 3.31e-01 | 100.0% | 68.9% |
| 2ldkA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 38.0 | 2.96e-01 | 85.5% | 70.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3231177 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.82 | 51.0 | 5.90e-01 | 94.2% | 88.0% |
| 4055256 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.79 | 53.0 | 4.84e-01 | 98.6% | 53.3% |
| 3480822 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 53.0 | 6.10e-01 | 98.6% | 98.0% |
| 3533318 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.78 | 50.0 | 5.80e-01 | 97.1% | 92.0% |
| 3304627 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.77 | 53.0 | 5.80e-01 | 98.6% | 89.1% |
| 3784140 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 53.0 | 5.84e-01 | 95.7% | 92.7% |
| 5036498 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.75 | 52.0 | 5.07e-01 | 98.6% | 66.7% |
| 3558926 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 49.0 | 4.50e-01 | 98.6% | 52.2% |
| 2831858 | 4.1.1.22 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L27e | 0.69 | 56.0 | 4.69e-01 | 98.6% | 51.7% |
| 2831843 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 45.0 | 3.97e-01 | 98.6% | 46.2% |
| 3910727 | 4.1.1.353 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 | 0.67 | 49.0 | 5.02e-01 | 97.1% | 81.5% |
| 1117665 | 4.1.1.108 ↗ | beta barrels › SH3 › SH3 › SH3 › XRN1_D2_D3 | 0.66 | 60.0 | 4.60e-01 | 100.0% | 93.3% |
| 3710893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 56.0 | 4.58e-01 | 100.0% | 54.6% |
| 3712672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 55.0 | 5.22e-01 | 98.6% | 96.2% |
| 3732786 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.61 | 48.0 | 4.04e-01 | 98.6% | 48.8% |
| 3520311 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.61 | 54.0 | 4.56e-01 | 100.0% | 82.6% |
| 3373298 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.59 | 53.0 | 3.64e-01 | 100.0% | 89.2% |
| 3482559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 53.0 | 3.94e-01 | 98.6% | 54.7% |
| 4101476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 45.0 | 4.44e-01 | 98.6% | 81.3% |
| 3393297 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 40.0 | 3.92e-01 | 100.0% | 67.5% |
| 3797602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 4.73e-01 | 97.1% | 100.0% |
| 3583921 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.56 | 46.0 | 4.61e-01 | 95.7% | 100.0% |
| 3271586 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.54 | 46.0 | 3.33e-01 | 100.0% | 61.8% |
| 4026536 | 220.1.1.53 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C | 0.54 | 48.0 | 3.97e-01 | 100.0% | 69.4% |
| 3719817 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 47.0 | 3.86e-01 | 100.0% | 75.4% |
| 3775836 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.53 | 46.0 | 4.02e-01 | 100.0% | 73.6% |
| 3617025 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.53 | 46.0 | 3.85e-01 | 100.0% | 68.0% |
| 3426315 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 37.0 | 3.42e-01 | 75.4% | 57.8% |
| 3478405 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.52 | 42.0 | 3.47e-01 | 91.3% | 59.2% |
| 3642679 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.52 | 44.0 | 3.91e-01 | 100.0% | 78.7% |
| 3164932 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.51 | 45.0 | 3.72e-01 | 100.0% | 68.8% |