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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00669
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00669
Identity
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
rep: NC_054972.1__YP_010079394.1__KMC60_gp23__00023__D49-112
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.61 | 37.0 | 4.37e-01 | 75.0% | 93.5% |
| 2pmeA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 52.0 | 3.47e-01 | 100.0% | 77.5% |
| 4it1B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 36.0 | 2.81e-01 | 75.0% | 30.1% |
| 3pcoB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 48.0 | 3.52e-01 | 97.2% | 91.4% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 43.0 | 3.33e-01 | 84.7% | 80.1% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 39.0 | 3.59e-01 | 77.8% | 66.3% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.54 | 43.0 | 3.84e-01 | 90.3% | 77.1% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.53 | 41.0 | 3.23e-01 | 86.1% | 47.6% |
| 3ialA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 45.0 | 3.11e-01 | 100.0% | 78.3% |
| 3i7fB02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 45.0 | 2.96e-01 | 100.0% | 74.3% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 34.0 | 2.85e-01 | 75.0% | 36.4% |
| 1d2iA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 41.0 | 3.02e-01 | 93.1% | 87.8% |
| 4h40A01 | 2.60.40.3730 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.51 | 38.0 | 3.07e-01 | 83.3% | 44.3% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 41.0 | 3.21e-01 | 91.7% | 63.7% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.50 | 39.0 | 3.29e-01 | 87.5% | 58.8% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3218512 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.67 | 51.0 | 4.50e-01 | 93.1% | 56.2% |
| 3212468 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.65 | 50.0 | 4.55e-01 | 98.6% | 61.0% |
| 4221113 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.65 | 40.0 | 2.83e-01 | 75.0% | 19.1% |
| 3617912 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.63 | 48.0 | 4.09e-01 | 97.2% | 50.0% |
| 3212189 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.61 | 52.0 | 4.50e-01 | 100.0% | 60.9% |
| 3208791 | 331.4.1.26 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Med13_N | 0.59 | 44.0 | 3.03e-01 | 80.6% | 21.9% |
| 5037379 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.59 | 52.0 | 3.80e-01 | 100.0% | 86.5% |
| 3673789 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.58 | 35.0 | 3.60e-01 | 72.2% | 63.2% |
| 4440592 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.57 | 49.0 | 3.53e-01 | 100.0% | 84.4% |
| 3742193 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.57 | 48.0 | 3.18e-01 | 100.0% | 86.6% |
| 3788996 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.56 | 48.0 | 3.43e-01 | 100.0% | 76.7% |
| 5061581 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.56 | 43.0 | 3.74e-01 | 86.1% | 53.6% |
| 4341249 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.56 | 48.0 | 3.47e-01 | 100.0% | 86.2% |
| 3913066 | 223.2.1.36 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 | 0.55 | 43.0 | 3.27e-01 | 86.1% | 49.7% |
| 3599587 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 43.0 | 3.21e-01 | 84.7% | 34.1% |
| 3392484 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.55 | 37.0 | 4.16e-01 | 75.0% | 98.0% |
| 4320728 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.55 | 47.0 | 3.47e-01 | 100.0% | 86.2% |
| 3759236 | 223.1.1.77 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_3 | 0.55 | 43.0 | 3.30e-01 | 86.1% | 54.7% |
| 4036210 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.54 | 41.0 | 3.04e-01 | 83.3% | 48.8% |
| 3394752 | 5.1.5.41 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 | 0.54 | 35.0 | 2.27e-01 | 75.0% | 12.8% |
| 3419015 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 32.0 | 3.53e-01 | 94.4% | 82.0% |
| 5031452 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 34.0 | 3.11e-01 | 75.0% | 47.4% |
| 4003636 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 43.0 | 2.75e-01 | 90.3% | 89.3% |
| 3177086 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 42.0 | 2.58e-01 | 88.9% | 14.2% |
| 3247406 | 3333.1.1.1 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_B | 0.53 | 40.0 | 3.20e-01 | 86.1% | 66.7% |
| 5011560 | 239.4.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain | 0.52 | 40.0 | 3.56e-01 | 83.3% | 65.7% |
| 3641604 | 244.1.1.39 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Peptidase_S28 | 0.52 | 36.0 | 3.19e-01 | 73.6% | 49.1% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.52 | 45.0 | 3.87e-01 | 100.0% | 90.0% |
| 3176927 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 41.0 | 2.69e-01 | 86.1% | 28.0% |
| 3370826 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 30.0 | 2.25e-01 | 73.6% | 20.0% |
| 4944943 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.52 | 42.0 | 3.85e-01 | 90.3% | 78.9% |
| 3947539 | 4114.1.1.1 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase | 0.51 | 44.0 | 3.22e-01 | 98.6% | 74.3% |
| 3197816 | 10.9.1.3 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C | 0.51 | 36.0 | 2.89e-01 | 76.4% | 99.4% |
| 3553055 | 10.32.1.196 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD | 0.51 | 41.0 | 3.19e-01 | 94.4% | 69.2% |
| 3416109 | 2.1.1.228 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind | 0.51 | 44.0 | 3.65e-01 | 100.0% | 94.1% |
| 3700204 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.50e-01 | 93.1% | 53.1% |
| 3697700 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.51 | 35.0 | 2.40e-01 | 73.6% | 33.2% |
| 3229304 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 34.0 | 2.10e-01 | 75.0% | 11.9% |