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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00009
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00009
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-109_256-288
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00198__D56-128_271-295
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 35.0 | 3.51e-01 | 78.6% | 55.2% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.59 | 44.0 | 3.74e-01 | 77.7% | 85.7% |
| 2xp1A02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 29.0 | 3.37e-01 | 83.9% | 66.3% |
| 1uurA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 30.0 | 2.86e-01 | 80.4% | 41.4% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 40.0 | 4.22e-01 | 76.8% | 100.0% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.55 | 46.0 | 3.31e-01 | 92.0% | 56.0% |
| 2cmrA00 | 1.20.58.1860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 3.65e-01 | 86.6% | 90.6% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.54 | 45.0 | 3.28e-01 | 92.0% | 63.8% |
| 1gep001 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.54 | 30.0 | 2.63e-01 | 83.0% | 35.6% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 41.0 | 3.91e-01 | 80.4% | 76.7% |
| 3k11A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 45.0 | 3.08e-01 | 94.6% | 76.3% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.52 | 26.0 | 3.24e-01 | 77.7% | 77.3% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.52 | 34.0 | 3.95e-01 | 92.0% | 93.8% |
| 3pfeA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 42.0 | 3.16e-01 | 90.2% | 88.3% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.51 | 36.0 | 3.07e-01 | 84.8% | 45.4% |
| 2a9sB00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.50 | 39.0 | 3.50e-01 | 84.8% | 70.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1164098 | 3535.1.1.1 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS | 0.59 | 35.0 | 3.51e-01 | 78.6% | 55.2% |
| 3602390 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.59 | 48.0 | 3.94e-01 | 86.6% | 76.5% |
| 5077761 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 31.0 | 2.80e-01 | 75.9% | 35.2% |
| 4031765 | 3535.1.1.1 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS | 0.56 | 34.0 | 3.42e-01 | 83.9% | 56.3% |
| 4970407 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 32.0 | 2.99e-01 | 75.9% | 47.6% |
| 4985771 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 31.0 | 2.88e-01 | 74.1% | 45.5% |
| 5067386 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 32.0 | 2.92e-01 | 75.0% | 46.9% |
| 5059410 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 32.0 | 2.93e-01 | 75.0% | 46.9% |
| 5000684 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.51 | 36.0 | 3.53e-01 | 83.9% | 67.5% |
D2
high
residues 115-165_221-243
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 40.0 | 3.60e-01 | 93.2% | 45.6% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.61 | 52.0 | 5.11e-01 | 94.6% | 92.5% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.59 | 50.0 | 3.73e-01 | 94.6% | 75.8% |
| 5umbA02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 43.0 | 4.29e-01 | 83.8% | 76.0% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.57 | 37.0 | 4.05e-01 | 82.4% | 86.0% |
| 6tmfI00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.57 | 39.0 | 2.78e-01 | 70.3% | 62.6% |
| 6rzqA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 40.0 | 3.89e-01 | 85.1% | 67.1% |
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 40.0 | 3.87e-01 | 82.4% | 67.9% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 36.0 | 3.54e-01 | 98.6% | 59.5% |
| 4petA01 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.55 | 41.0 | 3.10e-01 | 85.1% | 61.4% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.55 | 43.0 | 4.00e-01 | 85.1% | 97.9% |
| 4gniA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 40.0 | 3.85e-01 | 85.1% | 67.4% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.84e-01 | 100.0% | 67.0% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 25.0 | 3.17e-01 | 83.8% | 76.9% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 36.0 | 2.67e-01 | 70.3% | 70.7% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.57e-01 | 86.5% | 66.2% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.19e-01 | 94.6% | 59.2% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 43.0 | 3.88e-01 | 97.3% | 93.5% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 41.0 | 3.00e-01 | 97.3% | 93.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3224269 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.66 | 57.0 | 3.71e-01 | 100.0% | 56.4% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.66 | 49.0 | 3.53e-01 | 81.1% | 44.9% |
| 3488697 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.65 | 56.0 | 3.63e-01 | 98.6% | 57.7% |
| 3212521 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.65 | 55.0 | 3.64e-01 | 97.3% | 39.1% |
| 3221071 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.64 | 55.0 | 3.56e-01 | 97.3% | 36.6% |
| 2528214 | 3685.1.1.0 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain | 0.63 | 55.0 | 4.61e-01 | 95.9% | 75.2% |
| 4996918 | 3685.1.1.1 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA | 0.63 | 53.0 | 5.22e-01 | 93.2% | 91.3% |
| 4969826 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 48.0 | 2.92e-01 | 87.8% | 13.2% |
| 3221653 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.62 | 54.0 | 3.47e-01 | 100.0% | 63.2% |
| 3939245 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.62 | 54.0 | 3.51e-01 | 100.0% | 58.0% |
| 3937147 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.62 | 53.0 | 3.43e-01 | 98.6% | 33.2% |
| 3925086 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.62 | 54.0 | 3.50e-01 | 100.0% | 63.7% |
| 4025162 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 44.0 | 4.13e-01 | 77.0% | 76.8% |
| 3619358 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.61 | 53.0 | 3.46e-01 | 100.0% | 54.9% |
| 3933688 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 53.0 | 3.47e-01 | 100.0% | 56.8% |
| 3500481 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 52.0 | 3.45e-01 | 100.0% | 59.1% |
| 3733602 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.60 | 43.0 | 3.71e-01 | 74.3% | 59.1% |
| 3723552 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.59 | 48.0 | 3.00e-01 | 91.9% | 35.0% |
| 1274087 | 3685.1.1.0 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain | 0.58 | 51.0 | 4.90e-01 | 98.6% | 89.5% |
| 4955970 | 3685.1.1.0 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain | 0.58 | 48.0 | 4.65e-01 | 93.2% | 85.9% |
| 1942474 | 3685.1.1.0 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain | 0.57 | 50.0 | 4.91e-01 | 98.6% | 95.0% |
| 3631253 | 2484.1.1.206 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70, FGGY_C | 0.57 | 41.0 | 2.98e-01 | 85.1% | 26.7% |
| 3932224 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 49.0 | 3.30e-01 | 98.6% | 61.3% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.56 | 35.0 | 3.45e-01 | 90.5% | 57.0% |
| 3213940 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 47.0 | 3.10e-01 | 97.3% | 32.8% |
| 3739576 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.56 | 31.0 | 3.44e-01 | 82.4% | 67.3% |
| 4564327 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.56 | 38.0 | 3.70e-01 | 91.9% | 62.7% |
| 3177409 | 330.1.1.13 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Mgm101p | 0.55 | 44.0 | 3.41e-01 | 86.5% | 80.0% |
| 3497594 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 46.0 | 2.95e-01 | 100.0% | 57.6% |
| 3667109 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.54 | 46.0 | 3.91e-01 | 97.3% | 77.6% |
| 3519959 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 35.0 | 3.65e-01 | 97.3% | 76.9% |
| 3512028 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.53 | 44.0 | 3.10e-01 | 95.9% | 41.5% |
| 4121545 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 43.0 | 3.23e-01 | 94.6% | 69.0% |
| 4947948 | 101.1.2.876 ↗ | alpha arrays › HTH › HTH › winged helix domain › tRNA-synt_2d | 0.52 | 40.0 | 3.84e-01 | 100.0% | 72.9% |
| 3585734 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.52 | 39.0 | 3.20e-01 | 82.4% | 68.0% |
| 5043001 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.52 | 42.0 | 3.78e-01 | 100.0% | 62.9% |
| 5027566 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.92e-01 | 100.0% | 75.3% |
| 5023262 | 327.11.2.82 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 | 0.51 | 34.0 | 3.51e-01 | 94.6% | 75.4% |
| None | — | 0.51 | 42.0 | 3.00e-01 | 100.0% | 28.0% | |
| 3589192 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.51 | 41.0 | 4.03e-01 | 91.9% | 86.3% |
| 3923319 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.51 | 37.0 | 2.62e-01 | 77.0% | 75.7% |
| 3986356 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.50 | 41.0 | 2.84e-01 | 93.2% | 50.7% |
| 4944735 | 101.1.2.542 ↗ | alpha arrays › HTH › HTH › winged helix domain › ATPase_2 | 0.50 | 40.0 | 3.42e-01 | 98.6% | 52.0% |