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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00021
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00021
Identity
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-96
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 38.0 | 4.12e-01 | 84.9% | 74.7% |
| 2q7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 52.0 | 4.45e-01 | 97.8% | 67.1% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 52.0 | 4.35e-01 | 97.8% | 96.4% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 37.0 | 3.74e-01 | 79.6% | 60.9% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.58 | 36.0 | 3.57e-01 | 96.8% | 58.6% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 31.0 | 3.69e-01 | 89.2% | 77.8% |
| 3majA01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 48.0 | 3.45e-01 | 94.6% | 66.2% |
| 5y6iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 3.65e-01 | 87.1% | 75.3% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.36e-01 | 89.2% | 58.1% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 32.0 | 2.94e-01 | 91.4% | 43.5% |
| 3i9sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.83e-01 | 96.8% | 70.8% |
| 4hn9A02 | 1.20.58.2180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 29.0 | 3.33e-01 | 81.7% | 75.0% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 40.0 | 3.15e-01 | 89.2% | 75.8% |
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.50 | 40.0 | 3.47e-01 | 87.1% | 76.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741636 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 40.0 | 4.08e-01 | 84.9% | 60.2% |
| 4934097 | 102.3.1.0 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain | 0.64 | 40.0 | 4.15e-01 | 84.9% | 67.1% |
| 5045822 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 41.0 | 3.87e-01 | 97.8% | 56.5% |
| 2685 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.77e-01 | 77.4% | 62.9% |
| 3881978 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 42.0 | 4.06e-01 | 80.6% | 65.0% |
| 3989612 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 31.0 | 3.73e-01 | 80.6% | 78.3% |
| 3975404 | 4137.1.1.1 ↗ | a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 | 0.58 | 41.0 | 4.56e-01 | 88.2% | 100.0% |
| 4028433 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 30.0 | 3.22e-01 | 76.3% | 55.0% |
| 5004355 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.57 | 40.0 | 4.10e-01 | 73.1% | 98.9% |
| 4129764 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.57 | 34.0 | 3.66e-01 | 82.8% | 68.8% |
| 5043182 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.57 | 41.0 | 4.02e-01 | 76.3% | 95.0% |
| 3193246 | 2011.1.1.20 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20, Peptidase_M28 | 0.55 | 44.0 | 3.04e-01 | 87.1% | 33.1% |
| 3519121 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.54 | 34.0 | 3.20e-01 | 82.8% | 51.8% |
| 3388073 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 33.0 | 3.64e-01 | 91.4% | 76.0% |
| 4596757 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.53 | 34.0 | 3.39e-01 | 87.1% | 61.0% |