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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00048
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00048
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-208
Domain cluster:
rep: EU409559.1__ACB72572.1__X__00032__D76-201_219-245
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3499681 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.61 | 28.0 | 3.99e-01 | 76.5% | 91.4% |
| 3665028 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.53 | 24.0 | 3.47e-01 | 99.5% | 92.2% |
| 4615629 | 4.1.1.449 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1292 | 0.52 | 24.0 | 3.55e-01 | 91.5% | 100.0% |
| 3184565 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 34.0 | 3.25e-01 | 92.5% | 55.7% |
D2
high
residues 258-308
D3
medium
residues 214-255
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l22A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.62 | 49.0 | 3.92e-01 | 88.1% | 67.0% |
| 4tquQ02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 51.0 | 3.16e-01 | 100.0% | 66.8% |
| 4a17O01 | 1.10.1650.10 | Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 › | 0.55 | 38.0 | 3.69e-01 | 83.3% | 89.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950385 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 43.0 | 3.98e-01 | 76.2% | 80.0% |
| 3894372 | 2485.1.1.72 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA_2 | 0.60 | 51.0 | 3.33e-01 | 97.6% | 53.7% |
| 3264992 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.57 | 47.0 | 2.98e-01 | 92.9% | 25.5% |