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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00051

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00051

Identity

Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-110
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ja4D00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.76 52.0 3.85e-01 70.5% 66.4%
6xy4A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.73 49.0 3.87e-01 100.0% 35.0%
4hbdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 49.0 3.24e-01 70.5% 19.6%
1fm2A00 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.67 46.0 3.42e-01 72.1% 55.3%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 57.0 5.08e-01 98.4% 91.8%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 48.0 3.47e-01 83.6% 78.9%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 52.0 3.77e-01 96.7% 46.8%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 49.0 3.90e-01 95.1% 84.4%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.58 47.0 3.59e-01 91.8% 91.5%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 51.0 3.25e-01 98.4% 33.6%
1vk0A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 49.0 3.41e-01 96.7% 96.5%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.54 45.0 3.33e-01 100.0% 63.4%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 44.0 3.72e-01 100.0% 73.2%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.52 45.0 2.88e-01 96.7% 49.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277087 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.74 61.0 5.23e-01 90.2% 82.1%
3174765 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.66 55.0 3.70e-01 88.5% 51.2%
3676512 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.63 55.0 3.76e-01 100.0% 40.5%
4952112 298.2.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like 0.62 51.0 3.53e-01 90.2% 36.4%
3276887 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 52.0 4.32e-01 98.4% 83.5%
3491214 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 47.0 3.96e-01 85.2% 88.6%
184630 109.4.1.153 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCF 0.60 52.0 3.77e-01 96.7% 46.8%
4056284 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.60 53.0 3.86e-01 100.0% 76.9%
2092693 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.58 48.0 3.42e-01 90.2% 83.6%
3930836 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 50.0 4.01e-01 98.4% 85.8%
3825757 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.57 49.0 4.84e-01 95.1% 90.8%
3230678 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 47.0 3.54e-01 98.4% 73.3%
4956674 7602.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C 0.55 36.0 2.69e-01 90.2% 23.2%
3814339 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 44.0 4.24e-01 98.4% 79.7%
3652806 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 40.0 4.24e-01 91.8% 90.9%
4191800 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.53 38.0 4.06e-01 85.2% 85.5%
3929725 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 44.0 3.86e-01 95.1% 93.7%
4980470 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.51 45.0 3.87e-01 98.4% 84.2%
3620852 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.50 37.0 3.94e-01 86.9% 89.1%