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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00065
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00065
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-84_149-164
Domain cluster:
rep: OQ183418.1__WCO82147.1__vBPpSSYP_165__00165__D2-75
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 36.0 | 3.86e-01 | 99.0% | 59.1% |
| 1cd9B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 35.0 | 3.62e-01 | 99.0% | 54.1% |
| 2v5yA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 33.0 | 3.41e-01 | 98.0% | 51.6% |
| 1wisA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 36.0 | 3.64e-01 | 97.0% | 55.4% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 33.0 | 3.31e-01 | 100.0% | 47.1% |
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 34.0 | 3.27e-01 | 99.0% | 44.6% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 35.0 | 3.62e-01 | 93.0% | 58.7% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 32.0 | 3.60e-01 | 97.0% | 63.3% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.61 | 34.0 | 3.32e-01 | 97.0% | 48.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 34.0 | 3.56e-01 | 95.0% | 59.6% |
| 1xe0C00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.59 | 31.0 | 3.17e-01 | 95.0% | 51.5% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 32.0 | 3.15e-01 | 97.0% | 47.7% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 32.0 | 3.18e-01 | 97.0% | 48.6% |
| 3besR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 32.0 | 3.18e-01 | 99.0% | 48.6% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 26.0 | 2.79e-01 | 97.0% | 47.1% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.56e-01 | 97.0% | 63.0% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 32.0 | 2.78e-01 | 97.0% | 36.6% |
| 1wkyA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 31.0 | 2.80e-01 | 97.0% | 40.3% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 34.0 | 3.36e-01 | 96.0% | 61.5% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 35.0 | 3.03e-01 | 96.0% | 45.4% |
| 2atpD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.56e-01 | 97.0% | 67.0% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.15e-01 | 98.0% | 56.9% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 26.0 | 2.60e-01 | 95.0% | 42.3% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 30.0 | 3.08e-01 | 97.0% | 61.1% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4647057 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 37.0 | 3.63e-01 | 97.0% | 48.6% |
| 3619736 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.66 | 36.0 | 3.37e-01 | 98.0% | 43.2% |
| 3722266 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 35.0 | 3.30e-01 | 99.0% | 43.2% |
| 3640841 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.62 | 45.0 | 2.94e-01 | 75.0% | 31.4% |
| 3971638 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 34.0 | 3.23e-01 | 95.0% | 49.6% |
| 3907411 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.59 | 44.0 | 3.06e-01 | 79.0% | 77.0% |
| 3705968 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 39.0 | 3.42e-01 | 100.0% | 47.6% |
| 3926171 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 35.0 | 3.33e-01 | 98.0% | 51.7% |
| 3571546 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.56 | 34.0 | 2.90e-01 | 98.0% | 36.9% |
| 3889511 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.56 | 30.0 | 3.29e-01 | 98.0% | 61.2% |
| 3395915 | 302.1.1.3 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › PF29551 | 0.54 | 43.0 | 3.55e-01 | 100.0% | 48.0% |
| 3734833 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.54 | 46.0 | 4.91e-01 | 94.0% | 100.0% |
| 5074083 | 11.1.1.91 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Spo0M | 0.54 | 37.0 | 3.27e-01 | 100.0% | 49.0% |
| 5014684 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 29.0 | 3.55e-01 | 94.0% | 87.9% |
| 3684103 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.53 | 38.0 | 2.37e-01 | 75.0% | 46.4% |
| 3396396 | 10.32.1.216 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM | 0.53 | 31.0 | 2.49e-01 | 97.0% | 27.0% |
| 3831039 | 109.4.1.1599 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase | 0.53 | 37.0 | 2.31e-01 | 76.0% | 79.2% |
| 4979750 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 32.0 | 2.89e-01 | 97.0% | 43.4% |
| 141886 | 11.1.1.137 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tafi-CsgC | 0.50 | 30.0 | 3.08e-01 | 97.0% | 61.1% |
D2
medium
residues 85-148
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.84 | 62.0 | 4.05e-01 | 76.6% | 21.7% |
| 2p67A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.74 | 51.0 | 5.14e-01 | 90.6% | 70.8% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.66 | 49.0 | 4.90e-01 | 85.9% | 78.5% |
| 5h8yD02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.54 | 39.0 | 2.79e-01 | 76.6% | 37.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068460 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.87 | 59.0 | 4.41e-01 | 70.3% | 31.0% |
| 4973801 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.83 | 56.0 | 4.31e-01 | 70.3% | 33.3% |
| 4142281 | 105.1.1.55 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › Latarcin | 0.82 | 56.0 | 4.86e-01 | 71.9% | 47.9% |
| 5051540 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.79 | 55.0 | 4.00e-01 | 71.9% | 29.7% |
| 3935661 | 109.4.1.375 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRC8_N | 0.73 | 55.0 | 3.48e-01 | 84.4% | 16.5% |