←Back to structures
SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00067
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00067
Identity
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-42
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cmjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.88 | 77.0 | 4.35e-01 | 100.0% | 9.8% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.86 | 74.0 | 5.28e-01 | 100.0% | 34.2% |
| 1hu3A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.86 | 67.0 | 4.11e-01 | 87.2% | 16.2% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.86 | 74.0 | 5.27e-01 | 100.0% | 35.7% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.85 | 75.0 | 5.67e-01 | 100.0% | 44.6% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.85 | 76.0 | 6.51e-01 | 100.0% | 65.6% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.84 | 71.0 | 5.08e-01 | 94.9% | 42.7% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.84 | 71.0 | 5.53e-01 | 100.0% | 45.1% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.84 | 66.0 | 4.48e-01 | 87.2% | 24.8% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.83 | 72.0 | 6.00e-01 | 94.9% | 86.2% |
| 2vsoF01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.83 | 62.0 | 3.80e-01 | 82.1% | 14.3% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.83 | 73.0 | 4.19e-01 | 100.0% | 10.4% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.83 | 74.0 | 4.83e-01 | 97.4% | 39.1% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.82 | 68.0 | 4.64e-01 | 89.7% | 28.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 70.0 | 6.19e-01 | 100.0% | 72.4% |
| 3h95A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.81 | 59.0 | 4.04e-01 | 79.5% | 87.0% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 70.0 | 4.62e-01 | 100.0% | 26.3% |
| 3mtuE00 | 1.20.5.400 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 66.0 | 5.60e-01 | 100.0% | 56.1% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.80 | 67.0 | 4.20e-01 | 94.9% | 19.5% |
| 1lkvX02 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.80 | 66.0 | 4.56e-01 | 94.9% | 50.8% |
| 6gwuD00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.79 | 65.0 | 4.03e-01 | 89.7% | 17.3% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 68.0 | 4.29e-01 | 100.0% | 44.9% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.79 | 64.0 | 5.08e-01 | 89.7% | 97.4% |
| 4fxdA06 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.79 | 62.0 | 4.02e-01 | 84.6% | 68.1% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 68.0 | 4.94e-01 | 100.0% | 37.6% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.78 | 68.0 | 4.54e-01 | 100.0% | 27.3% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.78 | 67.0 | 5.50e-01 | 100.0% | 91.9% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.78 | 62.0 | 4.34e-01 | 89.7% | 74.6% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.77 | 66.0 | 4.43e-01 | 100.0% | 29.3% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.77 | 66.0 | 5.83e-01 | 100.0% | 66.1% |
| 5gmkZ01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.77 | 64.0 | 3.89e-01 | 92.3% | 21.1% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.77 | 64.0 | 5.19e-01 | 100.0% | 56.8% |
| 2kz6A01 | 6.10.140.1310 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 65.0 | 5.18e-01 | 100.0% | 60.5% |
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.76 | 59.0 | 4.17e-01 | 89.7% | 33.9% |
| 3ihjA02 | 1.10.287.1970 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 50.0 | 5.05e-01 | 71.8% | 71.1% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 63.0 | 5.09e-01 | 100.0% | 55.7% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.74 | 57.0 | 5.31e-01 | 87.2% | 70.0% |
| 4htpB00 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.72 | 61.0 | 3.81e-01 | 97.4% | 17.6% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 56.0 | 4.12e-01 | 94.9% | 39.5% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.71 | 57.0 | 4.03e-01 | 94.9% | 28.7% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.71 | 51.0 | 4.64e-01 | 76.9% | 80.8% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.70 | 61.0 | 4.63e-01 | 100.0% | 86.3% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.70 | 54.0 | 4.75e-01 | 92.3% | 54.5% |
| 3qxyA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.68 | 55.0 | 3.78e-01 | 100.0% | 25.7% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 55.0 | 3.66e-01 | 100.0% | 35.5% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.65 | 46.0 | 3.92e-01 | 84.6% | 42.5% |
| 2ga1A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.02e-01 | 82.1% | 70.4% |
| 2ongA01 | 1.50.10.130 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain | 0.64 | 52.0 | 3.33e-01 | 92.3% | 17.6% |
| 1pixA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.60 | 49.0 | 3.09e-01 | 94.9% | 45.9% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.51 | 32.0 | 2.69e-01 | 94.9% | 29.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3808540 | 376.1.6.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 | 0.92 | 83.0 | 5.42e-01 | 100.0% | 26.7% |
| 3314132 | 376.1.6.10 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 | 0.91 | 81.0 | 5.31e-01 | 100.0% | 26.7% |
| 3631582 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.87 | 76.0 | 5.59e-01 | 100.0% | 39.0% |
| 3712981 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 76.0 | 4.60e-01 | 100.0% | 16.7% |
| 3339561 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.86 | 76.0 | 5.59e-01 | 100.0% | 41.0% |
| 3294437 | 5086.1.1.110 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA | 0.86 | 74.0 | 5.91e-01 | 100.0% | 51.2% |
| 3880244 | 603.2.1.24 ↗ | alpha bundles › STAT-like › STAT › STAT › TBCA_PH | 0.85 | 75.0 | 4.93e-01 | 100.0% | 25.2% |
| 3672810 | 109.4.1.423 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PP4R3 | 0.85 | 74.0 | 4.56e-01 | 100.0% | 19.3% |
| 3223989 | 385.1.1.0 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines | 0.84 | 64.0 | 4.21e-01 | 84.6% | 21.4% |
| 3619662 | 192.12.1.3 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 | 0.84 | 72.0 | 5.74e-01 | 100.0% | 50.0% |
| 4528712 | 109.4.1.3083 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29810 | 0.84 | 73.0 | 4.36e-01 | 100.0% | 15.9% |
| 3665862 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.83 | 67.0 | 4.60e-01 | 87.2% | 33.3% |
| 3451778 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.82 | 70.0 | 4.82e-01 | 100.0% | 30.4% |
| 4387547 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.82 | 70.0 | 4.48e-01 | 100.0% | 21.1% |
| 4970557 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.82 | 71.0 | 5.88e-01 | 100.0% | 55.7% |
| 3498094 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 71.0 | 5.50e-01 | 100.0% | 45.9% |
| 4318541 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.82 | 71.0 | 5.19e-01 | 100.0% | 40.0% |
| 4166693 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.82 | 69.0 | 4.44e-01 | 100.0% | 22.7% |
| 5020701 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.81 | 71.0 | 4.33e-01 | 100.0% | 17.9% |
| 3404270 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.81 | 68.0 | 4.62e-01 | 92.3% | 68.5% |
| 4957532 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.81 | 71.0 | 4.89e-01 | 100.0% | 30.8% |
| 4311810 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.80 | 68.0 | 5.59e-01 | 100.0% | 53.3% |
| 4940281 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.80 | 69.0 | 5.92e-01 | 100.0% | 67.7% |
| 3702476 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.80 | 70.0 | 4.05e-01 | 100.0% | 11.9% |
| 3518386 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.80 | 69.0 | 5.54e-01 | 100.0% | 50.7% |
| 4086475 | 3755.3.1.466 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC | 0.80 | 71.0 | 4.67e-01 | 100.0% | 25.8% |
| 3277087 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.79 | 69.0 | 5.15e-01 | 97.4% | 41.1% |
| 3782787 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.79 | 66.0 | 5.28e-01 | 92.3% | 49.3% |
| 4397665 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.78 | 63.0 | 4.62e-01 | 89.7% | 81.0% |
| 3428852 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.77 | 68.0 | 4.66e-01 | 100.0% | 31.9% |
| 3819233 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.76 | 69.0 | 4.86e-01 | 100.0% | 71.3% |
| 4232718 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.76 | 65.0 | 4.87e-01 | 100.0% | 42.0% |
| 4124331 | 192.15.1.76 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID | 0.76 | 66.0 | 4.78e-01 | 100.0% | 37.3% |
| 3933449 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.74 | 63.0 | 4.91e-01 | 100.0% | 45.6% |
| 3286501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 62.0 | 4.24e-01 | 100.0% | 44.1% |
| 3660913 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.73 | 64.0 | 4.87e-01 | 100.0% | 46.7% |
| 5008040 | 101.1.2.951 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29259 | 0.73 | 61.0 | 4.37e-01 | 100.0% | 32.0% |
| None | — | 0.73 | 61.0 | 3.53e-01 | 97.4% | 10.1% | |
| 4682501 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.67 | 57.0 | 4.36e-01 | 100.0% | 58.0% |