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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00070

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00070

Identity

Kingdom:
phage

Quality

82.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-175
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2afcA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.94 80.0 8.56e-01 100.0% 98.7%
4j5rA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.91 71.0 7.87e-01 100.0% 97.9%
3ejgA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.82 64.0 6.60e-01 100.0% 84.8%
2acfB00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.81 63.0 6.39e-01 100.0% 81.5%
2dx6A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.81 64.0 6.77e-01 100.0% 91.1%
3ejfA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.79 64.0 6.58e-01 100.0% 88.6%
1hjzA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.74 65.0 6.32e-01 100.0% 84.4%
3kzwA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.68 58.0 6.06e-01 100.0% 98.1%
5nthA01 3.40.50.10590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases 0.68 58.0 5.61e-01 100.0% 81.8%
3gbvA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 44.0 4.70e-01 97.1% 76.5%
2gs3A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 35.0 3.53e-01 100.0% 50.9%
3c3kB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 36.0 4.10e-01 90.2% 72.4%
3ievA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 43.0 4.25e-01 91.4% 66.1%
1cvrA01 3.40.50.10390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Gingipain r; domain 1 0.61 39.0 4.60e-01 92.0% 93.2%
1t3kA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.60 36.0 4.06e-01 100.0% 76.5%
2p6rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 45.0 4.41e-01 100.0% 71.1%
1jx6A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 42.0 4.49e-01 97.7% 82.8%
4a8jF00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 4.21e-01 100.0% 57.6%
1itxA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 52.0 4.12e-01 94.8% 59.5%
3eleA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 47.0 4.29e-01 100.0% 63.8%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 47.0 4.23e-01 92.0% 61.8%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 4.06e-01 85.1% 99.2%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.57 38.0 4.10e-01 90.8% 78.5%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 51.0 4.31e-01 100.0% 68.0%
1rzuB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 47.0 4.05e-01 90.2% 78.8%
1j24A00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 35.0 3.94e-01 91.4% 84.2%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 50.0 4.08e-01 100.0% 90.1%
7t85A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 4.24e-01 97.7% 85.7%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 38.0 3.69e-01 97.1% 62.6%
3wndA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 4.35e-01 94.8% 85.5%
3pzgA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 49.0 3.88e-01 100.0% 87.7%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 39.0 3.41e-01 74.7% 97.3%
4trrG00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 4.22e-01 93.1% 96.9%
3rkrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 4.22e-01 93.1% 97.7%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 42.0 4.49e-01 100.0% 96.8%
6c6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 4.14e-01 91.4% 77.4%
2w9xA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 44.0 4.06e-01 91.4% 81.8%
4u3aB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 47.0 3.92e-01 98.3% 64.3%
7upvA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 46.0 3.54e-01 99.4% 96.2%
2o8bB05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.74e-01 96.6% 63.4%
1vkhA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.81e-01 91.4% 81.2%
4ei7A02 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.51 43.0 3.92e-01 91.4% 72.2%
3weeB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 39.0 3.94e-01 92.0% 80.1%
1bxbA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.51 45.0 3.46e-01 95.4% 53.5%
5lqdA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 38.0 3.62e-01 98.9% 65.2%
5dn8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 4.15e-01 93.1% 90.2%
1azwA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 37.0 3.08e-01 96.6% 42.5%
2hoeA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 4.31e-01 92.0% 99.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
10501 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.94 80.0 8.57e-01 100.0% 98.7%
1887707 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.92 75.0 8.20e-01 100.0% 98.0%
144300 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.89 69.0 7.38e-01 100.0% 91.4%
1935189 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.88 73.0 7.82e-01 100.0% 98.7%
5078574 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.87 70.0 7.65e-01 100.0% 98.6%
3921986 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.87 76.0 6.94e-01 100.0% 71.8%
3253664 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.85 75.0 7.88e-01 99.4% 100.0%
3972552 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.82 72.0 7.38e-01 100.0% 94.5%
4669176 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.81 71.0 7.46e-01 98.9% 98.8%
3378747 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.81 75.0 6.89e-01 100.0% 77.7%
169938 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.81 66.0 6.56e-01 100.0% 83.1%
3500115 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.80 78.0 7.00e-01 100.0% 79.0%
4310582 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.80 71.0 7.29e-01 100.0% 96.4%
4543889 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.79 76.0 7.56e-01 100.0% 98.3%
3734095 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.78 75.0 6.99e-01 99.4% 98.5%
4464051 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.75 72.0 7.16e-01 100.0% 97.8%
4314041 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.75 72.0 7.03e-01 100.0% 95.1%
4480390 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.75 72.0 6.91e-01 100.0% 95.9%
4203062 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.75 72.0 6.90e-01 100.0% 95.9%
3613771 7529.1.1.8 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Pdase_M17_N2 0.69 64.0 5.88e-01 100.0% 77.7%
3700612 7529.1.1.4 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C 0.69 65.0 5.33e-01 100.0% 71.3%
3403962 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.68 54.0 5.61e-01 100.0% 89.4%
3601918 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.68 58.0 5.54e-01 100.0% 78.5%
3539918 7529.1.1.15 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › AKAP_110, PF30680 0.67 59.0 5.20e-01 100.0% 66.5%
3410289 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.65 61.0 5.43e-01 100.0% 83.7%
3400779 7579.1.1.2 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.63 42.0 3.44e-01 90.8% 36.8%
5076558 2004.1.1.791 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_bR2 0.62 52.0 4.52e-01 100.0% 60.0%
4971773 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 51.0 4.42e-01 100.0% 57.5%
None 0.61 49.0 3.93e-01 91.4% 44.3%
4430737 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.60 42.0 3.74e-01 98.3% 49.4%
3838354 2004.1.1.63 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.59 55.0 4.08e-01 100.0% 57.4%
3259825 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.59 44.0 4.30e-01 90.8% 70.5%
4974838 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 48.0 4.31e-01 100.0% 62.5%
3494571 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.59 47.0 3.99e-01 85.6% 95.9%
3786181 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.58 47.0 4.07e-01 86.2% 94.4%
408985 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.57 47.0 4.39e-01 92.0% 69.4%
3839135 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 52.0 3.97e-01 100.0% 57.6%
3500833 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.57 46.0 4.01e-01 86.2% 96.7%
4645872 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.57 41.0 4.47e-01 91.4% 87.2%
None 0.57 52.0 3.97e-01 100.0% 57.3%
5028771 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.57 48.0 4.24e-01 90.2% 69.0%
None 0.56 46.0 3.77e-01 87.4% 82.7%
3268413 2004.1.1.66 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.56 43.0 3.88e-01 100.0% 58.7%
4631490 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.56 38.0 4.33e-01 91.4% 91.5%
3628545 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 51.0 4.18e-01 100.0% 62.2%
None 0.55 44.0 3.81e-01 86.2% 95.7%
5025838 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.55 46.0 4.78e-01 97.7% 96.4%
3779022 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 50.0 4.28e-01 100.0% 64.3%
3351970 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.55 46.0 4.18e-01 91.4% 66.7%
3263185 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 41.0 4.22e-01 88.5% 81.8%
4965979 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 49.0 3.94e-01 100.0% 63.5%
3496512 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 48.0 3.61e-01 100.0% 69.7%
4560916 2002.1.1.68 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_56 0.53 49.0 3.75e-01 100.0% 74.0%
4939644 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 47.0 4.29e-01 97.1% 93.9%
4975451 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 3.92e-01 89.7% 68.4%
3190705 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.53 49.0 3.34e-01 100.0% 89.4%
4946630 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 41.0 4.33e-01 92.0% 92.9%
3273251 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.51 45.0 3.82e-01 100.0% 56.9%
4032485 2004.1.1.45 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V 0.51 40.0 3.51e-01 96.6% 53.3%
4273274 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.51 43.0 3.76e-01 91.4% 89.5%
3650487 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 44.0 3.79e-01 94.8% 82.5%
3882867 2004.1.1.152 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KAP_NTPase 0.50 45.0 4.03e-01 97.1% 92.9%
3778875 2004.1.1.152 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KAP_NTPase 0.50 45.0 4.33e-01 97.1% 99.5%
None 0.50 43.0 3.64e-01 94.3% 70.0%