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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00083
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00083
Identity
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 58.0 | 4.77e-01 | 100.0% | 51.1% |
| 1p6oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.70 | 61.0 | 4.40e-01 | 100.0% | 70.5% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.67 | 58.0 | 4.24e-01 | 100.0% | 37.6% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.67 | 56.0 | 4.79e-01 | 98.1% | 66.3% |
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.65 | 51.0 | 4.93e-01 | 98.1% | 77.0% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 51.0 | 4.21e-01 | 98.1% | 47.9% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.64 | 56.0 | 4.82e-01 | 98.1% | 90.5% |
| 2b9lA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 54.0 | 3.98e-01 | 100.0% | 61.8% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.64 | 52.0 | 4.92e-01 | 100.0% | 74.2% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 54.0 | 4.35e-01 | 94.3% | 52.0% |
| 2g5gX01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 51.0 | 3.57e-01 | 94.3% | 99.5% |
| 3p1vA01 | 2.60.40.3250 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain | 0.63 | 56.0 | 4.10e-01 | 100.0% | 47.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.63 | 52.0 | 4.65e-01 | 100.0% | 76.8% |
| 1bu6O01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 53.0 | 3.46e-01 | 100.0% | 35.9% |
| 3no8A00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.62 | 53.0 | 3.85e-01 | 100.0% | 35.0% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 52.0 | 4.33e-01 | 94.3% | 57.0% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.62 | 50.0 | 4.44e-01 | 98.1% | 61.5% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.61 | 50.0 | 5.11e-01 | 98.1% | 100.0% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.61 | 53.0 | 3.95e-01 | 100.0% | 60.6% |
| 1e2tA02 | 3.30.1120.150 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 45.0 | 3.96e-01 | 84.9% | 95.3% |
| 5eo9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 3.97e-01 | 94.3% | 52.7% |
| 3bvxA05 | 2.60.40.1360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 41.0 | 3.46e-01 | 100.0% | 40.6% |
| 3gqqA00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.59 | 49.0 | 3.57e-01 | 100.0% | 50.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 49.0 | 3.55e-01 | 100.0% | 89.8% |
| 3ue3A02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 40.0 | 3.01e-01 | 71.7% | 80.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 47.0 | 4.00e-01 | 100.0% | 88.3% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 48.0 | 3.75e-01 | 98.1% | 69.7% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 3.85e-01 | 98.1% | 97.9% |
| 4y0eB00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.55 | 48.0 | 3.02e-01 | 100.0% | 42.1% |
| 2op5B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 3.82e-01 | 96.2% | 99.0% |
| 3gidB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 39.0 | 3.50e-01 | 96.2% | 51.8% |
| 3a5vA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 37.0 | 3.23e-01 | 100.0% | 42.4% |
| 4wd3A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 40.0 | 3.80e-01 | 96.2% | 68.0% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 46.0 | 3.53e-01 | 100.0% | 65.3% |
| 1xp4A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 40.0 | 2.70e-01 | 96.2% | 61.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784857 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.71 | 63.0 | 4.07e-01 | 100.0% | 48.8% |
| 3963488 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.70 | 62.0 | 4.78e-01 | 100.0% | 56.5% |
| 4064225 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.69 | 60.0 | 4.31e-01 | 100.0% | 45.8% |
| 3889864 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 51.0 | 5.03e-01 | 100.0% | 76.4% |
| 3800762 | 2011.1.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M17 | 0.67 | 56.0 | 3.64e-01 | 100.0% | 20.4% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.67 | 57.0 | 4.94e-01 | 98.1% | 61.2% |
| 3184485 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.66 | 58.0 | 4.61e-01 | 100.0% | 49.1% |
| 4929510 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 52.0 | 5.37e-01 | 88.7% | 98.0% |
| 3923859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 56.0 | 4.56e-01 | 100.0% | 58.0% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 53.0 | 4.46e-01 | 98.1% | 53.7% |
| 3221959 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.62 | 54.0 | 3.81e-01 | 100.0% | 45.9% |
| 3238728 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 52.0 | 4.32e-01 | 100.0% | 58.0% |
| 3598676 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 53.0 | 3.63e-01 | 100.0% | 57.9% |
| 3297021 | 219.1.1.107 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF674 | 0.60 | 53.0 | 3.37e-01 | 98.1% | 41.8% |
| 3501051 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.60 | 51.0 | 4.02e-01 | 96.2% | 58.3% |
| 3518924 | 11.1.1.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta | 0.60 | 51.0 | 3.50e-01 | 100.0% | 54.0% |
| 3404192 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.58 | 50.0 | 3.73e-01 | 100.0% | 66.4% |
| 4945301 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 41.0 | 3.05e-01 | 79.2% | 54.0% |
| 4942646 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.55 | 42.0 | 3.48e-01 | 94.3% | 62.6% |
| 4945022 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 50.0 | 3.98e-01 | 100.0% | 76.0% |
| 3839805 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.54 | 43.0 | 3.63e-01 | 96.2% | 97.1% |
| 4943464 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 41.0 | 3.53e-01 | 94.3% | 92.6% |
| 3935404 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.52 | 43.0 | 3.72e-01 | 98.1% | 77.8% |
| 5073557 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 47.0 | 3.41e-01 | 100.0% | 57.1% |
| 4558763 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.51 | 47.0 | 3.40e-01 | 100.0% | 54.8% |
| 4020851 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 46.0 | 3.37e-01 | 100.0% | 68.5% |
| 3183393 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.50 | 46.0 | 3.71e-01 | 100.0% | 86.3% |