←Back to structures
SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00089
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00089
Identity
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 61-107
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ta9B01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.72 | 42.0 | 2.86e-01 | 100.0% | 17.8% |
| 3irpX01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 54.0 | 3.81e-01 | 93.6% | 28.9% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 44.0 | 3.62e-01 | 74.5% | 38.8% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 3.74e-01 | 76.6% | 39.3% |
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.62 | 42.0 | 3.72e-01 | 72.3% | 52.7% |
| 5jciA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 43.0 | 3.11e-01 | 74.5% | 34.8% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.61 | 49.0 | 3.58e-01 | 100.0% | 35.0% |
| 4b3hA03 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.60 | 40.0 | 2.66e-01 | 70.2% | 77.4% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.45e-01 | 80.9% | 40.0% |
| 7w15A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.57 | 50.0 | 3.35e-01 | 100.0% | 66.2% |
| 3zssA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 44.0 | 2.67e-01 | 93.6% | 16.6% |
| 4fa8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 3.75e-01 | 100.0% | 54.8% |
| 2zxqA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 45.0 | 2.83e-01 | 97.9% | 43.6% |
| 1jr7A00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.55 | 47.0 | 2.86e-01 | 100.0% | 16.7% |
| 3zg9A00 | 6.20.370.110 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.55 | 29.0 | 3.16e-01 | 70.2% | 61.0% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.10e-01 | 76.6% | 38.6% |
| 8gr2A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 45.0 | 2.90e-01 | 100.0% | 22.1% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.30e-01 | 95.7% | 66.9% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 46.0 | 3.81e-01 | 100.0% | 54.0% |
| 3ka7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 35.0 | 2.39e-01 | 74.5% | 38.5% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.52 | 43.0 | 2.95e-01 | 97.9% | 38.1% |
| 4c5wA02 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.50 | 43.0 | 2.67e-01 | 100.0% | 24.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974000 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.79 | 53.0 | 4.75e-01 | 70.2% | 55.4% |
| 3588710 | 243.6.1.3 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › RsmF_methylt_CI | 0.75 | 51.0 | 4.41e-01 | 72.3% | 65.3% |
| 3211053 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 45.0 | 3.10e-01 | 97.9% | 20.6% |
| 3996748 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 43.0 | 4.15e-01 | 89.4% | 56.4% |
| 5057751 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.68 | 48.0 | 4.06e-01 | 78.7% | 65.9% |
| None | — | 0.67 | 46.0 | 3.85e-01 | 76.6% | 42.5% | |
| 3946198 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.67 | 45.0 | 3.69e-01 | 74.5% | 38.8% |
| 3387117 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.67 | 45.0 | 3.79e-01 | 74.5% | 41.2% |
| 3948722 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.66 | 43.0 | 3.48e-01 | 76.6% | 33.7% |
| 3969385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 43.0 | 3.66e-01 | 74.5% | 41.2% |
| 4008585 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.64 | 43.0 | 3.52e-01 | 74.5% | 36.7% |
| 3279636 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.63 | 43.0 | 3.57e-01 | 76.6% | 37.8% |
| 4007894 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.63 | 43.0 | 3.52e-01 | 76.6% | 37.8% |
| 3280300 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.62 | 42.0 | 3.46e-01 | 76.6% | 37.8% |
| 3973740 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.61 | 42.0 | 3.37e-01 | 76.6% | 35.0% |
| 3713384 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.61 | 48.0 | 3.44e-01 | 100.0% | 55.9% |
| 4372546 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.60 | 41.0 | 3.38e-01 | 76.6% | 37.8% |
| 3989440 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.59 | 41.0 | 3.41e-01 | 76.6% | 38.9% |
| 3285856 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.59 | 40.0 | 3.30e-01 | 74.5% | 36.7% |
| 3981080 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.58 | 39.0 | 3.35e-01 | 76.6% | 40.0% |
| 4032354 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.58 | 39.0 | 3.27e-01 | 76.6% | 37.8% |
| 3970777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 3.26e-01 | 76.6% | 37.8% |
| 4958853 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.57 | 50.0 | 3.09e-01 | 100.0% | 24.0% |
| 4151184 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.57 | 49.0 | 3.31e-01 | 100.0% | 77.9% |
| 4010187 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 40.0 | 3.39e-01 | 83.0% | 41.1% |
| 3221919 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.56 | 42.0 | 2.46e-01 | 80.9% | 12.5% |
| 3946422 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 45.0 | 3.74e-01 | 100.0% | 50.6% |
| 1005475 | 2002.1.1.169 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_101 | 0.55 | 45.0 | 2.83e-01 | 97.9% | 43.6% |
| 1421675 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.54 | 41.0 | 3.13e-01 | 85.1% | 93.5% |
| 4031672 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.54 | 36.0 | 3.22e-01 | 76.6% | 43.8% |
| 5047183 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 47.0 | 2.90e-01 | 100.0% | 17.4% |
| 3739702 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 43.0 | 3.71e-01 | 95.7% | 81.2% |
| 3217954 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.53 | 41.0 | 2.59e-01 | 89.4% | 89.5% |
| 3728935 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.53 | 39.0 | 3.73e-01 | 85.1% | 86.7% |
| 3740889 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.52 | 40.0 | 2.80e-01 | 91.5% | 26.0% |
| 4624372 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.52 | 44.0 | 3.49e-01 | 97.9% | 46.3% |
| 3278985 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 44.0 | 3.15e-01 | 95.7% | 70.0% |
| 222395 | 304.55.1.6 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobA_MobL | 0.52 | 43.0 | 2.95e-01 | 97.9% | 38.1% |
| 5043517 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.52 | 40.0 | 2.87e-01 | 100.0% | 77.9% |
| 3983052 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.51 | 44.0 | 2.84e-01 | 100.0% | 72.4% |
| 4057793 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.51 | 41.0 | 2.96e-01 | 100.0% | 36.4% |
| 4585075 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 41.0 | 3.43e-01 | 100.0% | 52.5% |
D2
medium
residues 1-51