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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00096
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00096
Identity
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-81
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 42.0 | 4.44e-01 | 95.9% | 76.9% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.63 | 49.0 | 4.00e-01 | 83.6% | 89.8% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 52.0 | 3.53e-01 | 94.5% | 91.3% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.63 | 44.0 | 4.23e-01 | 86.3% | 64.3% |
| 1i6pA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.63 | 50.0 | 3.68e-01 | 90.4% | 82.2% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.61 | 53.0 | 4.24e-01 | 100.0% | 75.0% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.60 | 45.0 | 4.04e-01 | 80.8% | 95.2% |
| 4o1jA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.60 | 51.0 | 3.73e-01 | 93.2% | 75.1% |
| 6epyA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.59 | 51.0 | 3.46e-01 | 94.5% | 57.8% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 51.0 | 4.69e-01 | 98.6% | 81.2% |
| 1uxdA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 30.0 | 3.29e-01 | 84.9% | 59.3% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 38.0 | 4.27e-01 | 86.3% | 92.5% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 44.0 | 3.16e-01 | 86.3% | 42.9% |
| 2uvaG01 | 1.20.1050.120 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 48.0 | 4.03e-01 | 100.0% | 74.3% |
| 2fdrA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 40.0 | 4.14e-01 | 95.9% | 83.6% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 42.0 | 4.30e-01 | 98.6% | 86.1% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 35.0 | 4.03e-01 | 94.5% | 90.2% |
| 4pt1B00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.55 | 44.0 | 3.65e-01 | 86.3% | 86.7% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.55 | 38.0 | 4.08e-01 | 74.0% | 89.8% |
| 3hi0A03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 45.0 | 3.39e-01 | 98.6% | 58.2% |
| 1fm2A00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.53 | 40.0 | 3.31e-01 | 84.9% | 59.9% |
| 2iw5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 47.0 | 4.10e-01 | 98.6% | 70.6% |
| 2c43A02 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 43.0 | 3.58e-01 | 87.7% | 89.6% |
| 4hstA01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.52 | 37.0 | 3.05e-01 | 79.5% | 61.6% |
| 2py6A01 | 1.20.1270.160 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 43.0 | 4.34e-01 | 93.2% | 97.3% |
| 8azbA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 38.0 | 2.72e-01 | 84.9% | 26.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3667102 | 148.1.3.205 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 | 0.74 | 46.0 | 4.57e-01 | 80.8% | 61.3% |
| 2526326 | 4974.1.2.0 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain | 0.70 | 54.0 | 4.28e-01 | 86.3% | 50.9% |
| 3392146 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.67 | 56.0 | 5.00e-01 | 94.5% | 81.0% |
| 3740697 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.66 | 57.0 | 5.20e-01 | 97.3% | 86.0% |
| 3395908 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.66 | 55.0 | 4.81e-01 | 94.5% | 73.9% |
| 3278774 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.66 | 49.0 | 4.34e-01 | 83.6% | 55.2% |
| 3502367 | 2003.1.1.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M | 0.65 | 54.0 | 3.66e-01 | 94.5% | 93.2% |
| 3592521 | 7073.1.1.0 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme | 0.65 | 56.0 | 5.01e-01 | 97.3% | 82.9% |
| 4142258 | 2003.1.1.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M | 0.65 | 54.0 | 3.67e-01 | 94.5% | 97.5% |
| 3673019 | 2003.1.1.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M | 0.64 | 55.0 | 3.67e-01 | 95.9% | 92.9% |
| 3319718 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.64 | 55.0 | 4.08e-01 | 97.3% | 43.6% |
| 4946543 | 2004.1.3.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR_N | 0.64 | 54.0 | 4.06e-01 | 98.6% | 81.5% |
| 3716509 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 54.0 | 5.01e-01 | 98.6% | 77.9% |
| 4227822 | 7073.1.1.0 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme | 0.63 | 52.0 | 5.16e-01 | 94.5% | 88.0% |
| 4938090 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.63 | 41.0 | 2.97e-01 | 95.9% | 22.9% |
| 3962969 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.61 | 40.0 | 3.80e-01 | 95.9% | 55.6% |
| 4972168 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.60 | 50.0 | 4.43e-01 | 97.3% | 76.5% |
| 3470492 | 109.4.1.88 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN | 0.59 | 41.0 | 2.43e-01 | 72.6% | 30.9% |
| 3978520 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.57 | 51.0 | 4.32e-01 | 100.0% | 85.8% |
| 1554527 | 2006.1.1.46 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, HAD_2 | 0.57 | 43.0 | 3.06e-01 | 86.3% | 26.5% |
| 3699903 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.56 | 47.0 | 4.29e-01 | 94.5% | 97.0% |
| 3937336 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 47.0 | 4.12e-01 | 100.0% | 72.5% |
| 3231433 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 43.0 | 3.19e-01 | 87.7% | 46.0% |
| 3976621 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.55 | 48.0 | 4.21e-01 | 98.6% | 95.5% |
| 4974666 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.54 | 46.0 | 3.14e-01 | 100.0% | 78.1% |