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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00107
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00107
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-113
Domain cluster:
rep: MZ326860.1__QYW02172.1__CPT_Sonora_071__00069__D16-113
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.84 | 36.0 | 5.29e-01 | 93.2% | 87.8% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.81 | 39.0 | 3.29e-01 | 100.0% | 31.2% |
| 6mptA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.71 | 46.0 | 5.01e-01 | 93.2% | 79.8% |
| 3c9fA02 | 3.90.780.10 | Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain | 0.61 | 43.0 | 3.70e-01 | 86.4% | 44.6% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.59 | 49.0 | 4.85e-01 | 99.0% | 82.9% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 40.0 | 3.60e-01 | 70.9% | 82.1% |
| 7vyuA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 35.0 | 3.10e-01 | 70.9% | 41.5% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 43.0 | 4.20e-01 | 85.4% | 96.5% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.54 | 42.0 | 4.10e-01 | 85.4% | 97.3% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.53 | 40.0 | 4.24e-01 | 89.3% | 92.1% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.52 | 47.0 | 3.24e-01 | 100.0% | 33.8% |
| 6cw0A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 44.0 | 4.39e-01 | 90.3% | 94.2% |
| 4aqnA02 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 37.0 | 3.02e-01 | 72.8% | 63.7% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 45.0 | 4.35e-01 | 100.0% | 95.1% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 46.0 | 4.52e-01 | 98.1% | 88.6% |
| 3hmfA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 47.0 | 4.50e-01 | 99.0% | 87.9% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 37.0 | 3.32e-01 | 75.7% | 76.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3711370 | 3004.1.1.0 ↗ | alpha bundles › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain | 0.86 | 37.0 | 5.62e-01 | 96.1% | 95.6% |
| 5076612 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.67 | 53.0 | 4.73e-01 | 83.5% | 80.0% |
| 4958255 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.65 | 51.0 | 4.38e-01 | 83.5% | 80.0% |
| 4938653 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.63 | 51.0 | 4.71e-01 | 85.4% | 84.6% |
| 4965445 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.62 | 48.0 | 4.14e-01 | 83.5% | 79.4% |
| 3903882 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.58 | 43.0 | 3.14e-01 | 79.6% | 58.1% |
| 3700198 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.57 | 51.0 | 4.73e-01 | 97.1% | 90.0% |
| 5044425 | 321.2.1.1 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase › Urocanase_C | 0.57 | 49.0 | 3.97e-01 | 99.0% | 97.2% |
| 3460858 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.56 | 36.0 | 3.53e-01 | 78.6% | 57.4% |
| 4663105 | 109.4.1.1286 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 | 0.56 | 44.0 | 3.56e-01 | 87.4% | 72.3% |
| 3765227 | 109.3.1.92 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ZSWIM4-8_C | 0.55 | 40.0 | 2.92e-01 | 75.7% | 27.4% |
| 3723352 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.55 | 46.0 | 4.36e-01 | 91.3% | 87.5% |
| 3406294 | 601.1.2.105 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Transmemb_17 | 0.54 | 48.0 | 4.51e-01 | 100.0% | 93.8% |
| 3497751 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 41.0 | 4.57e-01 | 80.6% | 96.5% |
| 3637864 | 101.1.1.344 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › NPR3 | 0.54 | 36.0 | 3.72e-01 | 83.5% | 71.0% |
| 3929773 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.53 | 40.0 | 2.94e-01 | 80.6% | 63.4% |
| 3564696 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.52 | 43.0 | 4.28e-01 | 100.0% | 82.9% |
| None | — | 0.50 | 44.0 | 3.17e-01 | 98.1% | 57.0% | |
| 4011506 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 34.0 | 3.76e-01 | 82.5% | 96.0% |