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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00109

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00109

Identity

Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-57
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.76 53.0 3.31e-01 72.7% 33.5%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.76 40.0 3.60e-01 70.9% 37.3%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.76 55.0 4.29e-01 78.2% 49.2%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.75 56.0 4.63e-01 100.0% 46.2%
2oplA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.72 62.0 4.42e-01 100.0% 43.6%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 40.0 3.67e-01 72.7% 43.8%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 40.0 4.02e-01 83.6% 58.2%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 48.0 3.99e-01 76.4% 54.6%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 39.0 3.76e-01 72.7% 50.8%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 36.0 3.76e-01 70.9% 56.0%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 42.0 4.17e-01 74.5% 64.3%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 36.0 4.32e-01 76.4% 87.9%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 44.0 3.45e-01 72.7% 56.9%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 45.0 3.72e-01 76.4% 59.6%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 45.0 3.75e-01 78.2% 44.7%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 47.0 3.70e-01 92.7% 42.6%
3g7qA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 43.0 2.93e-01 76.4% 86.6%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 45.0 4.51e-01 83.6% 82.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 4.21e-01 81.8% 68.2%
4kzsA03 3.30.160.710 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 40.0 3.44e-01 74.5% 54.6%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.58 44.0 3.01e-01 81.8% 60.1%
2agkA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 37.0 2.50e-01 72.7% 15.9%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 48.0 2.88e-01 92.7% 65.2%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 42.0 3.51e-01 96.4% 83.9%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 34.0 3.14e-01 70.9% 50.0%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 41.0 3.31e-01 89.1% 52.2%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 34.0 3.60e-01 76.4% 100.0%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 35.0 2.56e-01 72.7% 40.6%
2ebnA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 41.0 2.73e-01 100.0% 80.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3614493 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.81 57.0 3.48e-01 96.4% 13.5%
3515285 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.79 41.0 5.30e-01 70.9% 93.3%
3586791 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.79 43.0 5.24e-01 72.7% 85.7%
3317164 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.78 41.0 5.17e-01 70.9% 93.3%
3473633 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.77 40.0 4.84e-01 70.9% 80.0%
3576110 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.76 43.0 3.53e-01 81.8% 32.6%
3923282 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.76 40.0 4.88e-01 74.5% 82.9%
2354 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.75 43.0 4.63e-01 83.6% 67.4%
3217609 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.74 43.0 4.80e-01 85.5% 74.4%
4003256 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.74 43.0 4.50e-01 81.8% 64.0%
3507504 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.74 42.0 4.57e-01 72.7% 68.9%
3624687 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.73 41.0 4.32e-01 72.7% 62.0%
4972215 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 64.0 4.24e-01 100.0% 25.7%
4344976 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.71 53.0 3.09e-01 80.0% 44.8%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.71 41.0 2.61e-01 76.4% 11.6%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.70 57.0 4.33e-01 100.0% 40.0%
3263562 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.70 47.0 4.74e-01 96.4% 70.9%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.69 43.0 4.31e-01 78.2% 63.6%
3871062 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 46.0 5.15e-01 78.2% 100.0%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 42.0 4.26e-01 78.2% 63.6%
3225116 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 42.0 4.86e-01 74.5% 90.0%
1348634 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 42.0 4.17e-01 74.5% 64.3%
5013333 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 39.0 4.62e-01 76.4% 94.3%
3482775 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 37.0 3.98e-01 76.4% 66.7%
3228875 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 37.0 3.76e-01 76.4% 60.0%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 46.0 4.53e-01 81.8% 76.7%
3649933 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.62 37.0 3.88e-01 74.5% 64.0%
3194124 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.60 46.0 3.04e-01 83.6% 25.3%
3285549 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.60 55.0 3.65e-01 100.0% 56.0%
1396826 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 44.0 4.19e-01 81.8% 67.2%
3255424 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.59 43.0 3.06e-01 78.2% 52.7%
3267950 207.1.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.59 47.0 3.41e-01 96.4% 83.8%
3400923 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 47.0 4.57e-01 100.0% 80.0%
3344139 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 37.0 3.78e-01 76.4% 65.5%
3707684 243.11.1.0 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.58 46.0 4.37e-01 85.5% 100.0%
3362766 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 38.0 3.91e-01 74.5% 74.0%
5013701 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.56 45.0 3.60e-01 96.4% 45.7%
3781230 1013.1.1.1 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 0.54 45.0 3.08e-01 96.4% 53.8%
4507628 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.54 36.0 3.77e-01 74.5% 84.4%
4211951 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.53 37.0 3.37e-01 76.4% 52.5%
3927286 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 42.0 3.80e-01 89.1% 78.7%
D2 medium residues 69-111
PDB