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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00134
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00134
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-117
Domain cluster:
rep: MW960030.1__QWY82978.1__X__00024__D5-103
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vz0A01 | 3.90.1530.30 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › | 0.86 | 50.0 | 6.35e-01 | 73.5% | 95.2% |
| 1vk1A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.80 | 61.0 | 6.11e-01 | 97.1% | 78.4% |
| 1xw3A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.75 | 62.0 | 6.37e-01 | 98.0% | 92.7% |
| 2hwjA01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.69 | 61.0 | 5.65e-01 | 99.0% | 76.2% |
| 1qe5A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 43.0 | 3.21e-01 | 81.4% | 56.8% |
| 3h6eA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 42.0 | 3.30e-01 | 80.4% | 71.5% |
| 3cuxA01 | 3.20.20.360 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 | 0.52 | 41.0 | 2.82e-01 | 85.3% | 45.3% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943767 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.91 | 71.0 | 7.79e-01 | 100.0% | 96.5% |
| 5071270 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.91 | 70.0 | 7.65e-01 | 99.0% | 95.3% |
| 4927766 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.91 | 65.0 | 7.12e-01 | 91.2% | 88.2% |
| 3587492 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.90 | 68.0 | 6.93e-01 | 94.1% | 80.0% |
| 4344404 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.90 | 71.0 | 7.17e-01 | 99.0% | 83.0% |
| 3942579 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.89 | 62.0 | 7.17e-01 | 88.2% | 96.0% |
| 4928673 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.89 | 68.0 | 7.60e-01 | 95.1% | 100.0% |
| 2841795 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.89 | 71.0 | 7.60e-01 | 100.0% | 94.4% |
| 5073612 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.89 | 73.0 | 7.30e-01 | 100.0% | 83.8% |
| 5032171 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.89 | 68.0 | 7.41e-01 | 99.0% | 95.3% |
| 4946472 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.88 | 66.0 | 7.38e-01 | 92.2% | 97.5% |
| 3945776 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.88 | 71.0 | 7.41e-01 | 100.0% | 90.5% |
| 4970064 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.87 | 65.0 | 7.27e-01 | 92.2% | 97.5% |
| 2710114 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.87 | 64.0 | 6.75e-01 | 92.2% | 83.9% |
| 3948471 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.86 | 74.0 | 7.05e-01 | 100.0% | 80.0% |
| 4862436 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.86 | 72.0 | 7.47e-01 | 100.0% | 93.7% |
| 5052297 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.84 | 63.0 | 6.89e-01 | 100.0% | 92.9% |
| 4929132 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.83 | 70.0 | 7.29e-01 | 100.0% | 94.7% |
| 2387795 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.82 | 62.0 | 6.70e-01 | 99.0% | 92.0% |
| 5082449 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.82 | 65.0 | 6.90e-01 | 100.0% | 94.4% |
| 3971842 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.82 | 65.0 | 5.96e-01 | 96.1% | 65.4% |
| 4940273 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.82 | 58.0 | 6.70e-01 | 89.2% | 100.0% |
| 4393138 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.81 | 70.0 | 6.60e-01 | 100.0% | 77.5% |
| 2543651 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.81 | 65.0 | 6.97e-01 | 99.0% | 96.6% |
| 4370861 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.80 | 67.0 | 6.53e-01 | 100.0% | 81.8% |
| 3278076 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.79 | 65.0 | 6.88e-01 | 99.0% | 97.8% |
| 3992892 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.79 | 57.0 | 6.44e-01 | 92.2% | 96.2% |
| 2061501 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.79 | 61.0 | 6.25e-01 | 100.0% | 83.8% |
| 5049279 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.79 | 70.0 | 7.12e-01 | 100.0% | 96.0% |
| 7603 | 876.1.1.2 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc_2 | 0.78 | 58.0 | 6.25e-01 | 93.1% | 90.7% |
| 3772471 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.78 | 60.0 | 6.33e-01 | 93.1% | 90.0% |
| 3946729 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.77 | 64.0 | 6.61e-01 | 93.1% | 93.7% |
| 3966817 | 876.1.1.2 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc_2 | 0.77 | 60.0 | 6.57e-01 | 92.2% | 97.6% |
| 3988408 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.77 | 54.0 | 6.26e-01 | 95.1% | 100.0% |
| 5073795 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.77 | 71.0 | 6.62e-01 | 100.0% | 96.0% |
| 4964225 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.76 | 69.0 | 6.03e-01 | 100.0% | 96.0% |
| 3247083 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.76 | 58.0 | 5.50e-01 | 98.0% | 68.3% |
| 5083282 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.75 | 63.0 | 6.44e-01 | 100.0% | 92.0% |
| 3279914 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.75 | 69.0 | 5.72e-01 | 97.1% | 74.5% |
| 3602844 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.75 | 60.0 | 5.63e-01 | 98.0% | 70.8% |
| 3506049 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.75 | 56.0 | 5.35e-01 | 95.1% | 68.7% |
| 85732 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.74 | 61.0 | 5.74e-01 | 97.1% | 73.6% |
| 4947338 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.73 | 69.0 | 5.47e-01 | 100.0% | 57.9% |
| 3210197 | 876.1.1.6 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › PF29418 | 0.72 | 66.0 | 6.61e-01 | 100.0% | 98.1% |
| 3701649 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.72 | 61.0 | 6.23e-01 | 96.1% | 92.0% |
| 5030163 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.71 | 64.0 | 6.28e-01 | 100.0% | 95.5% |
| 5058313 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.70 | 60.0 | 5.91e-01 | 98.0% | 85.5% |
| 5018770 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.69 | 62.0 | 5.84e-01 | 99.0% | 96.8% |
| 4931182 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.69 | 59.0 | 4.79e-01 | 93.1% | 96.8% |
| 5050551 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.69 | 60.0 | 5.24e-01 | 94.1% | 95.3% |
| 4984325 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.67 | 61.0 | 5.14e-01 | 97.1% | 71.2% |
| 5081788 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.66 | 60.0 | 5.87e-01 | 100.0% | 94.5% |
| 5080912 | 876.1.1.9 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DndB | 0.66 | 61.0 | 5.65e-01 | 100.0% | 85.9% |
| 4930273 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.66 | 58.0 | 4.83e-01 | 93.1% | 99.4% |
| 5075504 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.65 | 54.0 | 5.68e-01 | 95.1% | 100.0% |
| 3279590 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.65 | 56.0 | 5.18e-01 | 91.2% | 94.4% |
| 4931704 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.65 | 56.0 | 4.52e-01 | 93.1% | 92.1% |
| 4930140 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.63 | 55.0 | 4.37e-01 | 93.1% | 72.2% |
| 4931684 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.63 | 55.0 | 4.55e-01 | 93.1% | 66.3% |
| 4930255 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.63 | 55.0 | 4.70e-01 | 93.1% | 91.8% |
D2
high
residues 260-313
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.85 | 59.0 | 4.48e-01 | 72.2% | 75.7% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 66.0 | 4.20e-01 | 100.0% | 80.9% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 51.0 | 3.97e-01 | 72.2% | 34.2% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 49.0 | 3.84e-01 | 70.4% | 33.3% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.73 | 63.0 | 5.39e-01 | 96.3% | 73.3% |
| 3oosA02 | 6.10.140.700 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 50.0 | 4.99e-01 | 74.1% | 71.4% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 49.0 | 4.02e-01 | 72.2% | 52.5% |
| 2aaaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 48.0 | 2.90e-01 | 74.1% | 21.7% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.68 | 47.0 | 4.05e-01 | 72.2% | 51.7% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.68 | 58.0 | 5.08e-01 | 100.0% | 69.4% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.68 | 60.0 | 5.16e-01 | 98.1% | 67.1% |
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.68 | 45.0 | 3.68e-01 | 72.2% | 37.8% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 45.0 | 3.85e-01 | 70.4% | 92.1% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.67 | 49.0 | 4.75e-01 | 85.2% | 69.4% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 45.0 | 4.14e-01 | 72.2% | 65.8% |
| 2r0cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 53.0 | 3.52e-01 | 98.1% | 80.8% |
| 1sf8G00 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.63 | 51.0 | 3.98e-01 | 90.7% | 73.6% |
| 1hekA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.63 | 47.0 | 3.71e-01 | 81.5% | 80.2% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 55.0 | 3.84e-01 | 96.3% | 32.4% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 42.0 | 3.31e-01 | 72.2% | 36.2% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 54.0 | 4.01e-01 | 100.0% | 60.2% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.60 | 46.0 | 3.58e-01 | 85.2% | 83.3% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.59 | 41.0 | 3.35e-01 | 72.2% | 72.3% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.58 | 44.0 | 3.25e-01 | 83.3% | 36.2% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.57 | 41.0 | 3.64e-01 | 72.2% | 56.8% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.57 | 45.0 | 3.51e-01 | 92.6% | 42.7% |
| 2wsiA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 46.0 | 3.05e-01 | 100.0% | 95.1% |
| 2ilrA00 | 1.25.40.480 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 40.0 | 2.60e-01 | 75.9% | 27.7% |
| 3tsaA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 47.0 | 3.38e-01 | 100.0% | 71.8% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 42.0 | 3.55e-01 | 83.3% | 53.1% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.54 | 43.0 | 3.99e-01 | 96.3% | 72.4% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.51 | 43.0 | 4.21e-01 | 98.1% | 100.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4538846 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.81 | 59.0 | 4.94e-01 | 75.9% | 55.3% |
| 3808261 | 3826.1.1.27 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 | 0.78 | 52.0 | 4.50e-01 | 70.4% | 62.4% |
| 3593123 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.77 | 53.0 | 4.36e-01 | 72.2% | 44.2% |
| 4341991 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.77 | 56.0 | 3.06e-01 | 77.8% | 45.4% |
| 4682501 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.76 | 52.0 | 4.19e-01 | 72.2% | 94.0% |
| 4129436 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.74 | 50.0 | 4.00e-01 | 70.4% | 91.4% |
| 4969330 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.74 | 62.0 | 4.69e-01 | 94.4% | 71.3% |
| 4293733 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.73 | 51.0 | 4.06e-01 | 72.2% | 91.4% |
| 3419359 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.71 | 63.0 | 4.63e-01 | 96.3% | 57.0% |
| 3423702 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.71 | 61.0 | 4.34e-01 | 96.3% | 48.1% |
| 4942190 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.71 | 62.0 | 5.26e-01 | 98.1% | 64.8% |
| 4666538 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.69 | 60.0 | 4.61e-01 | 100.0% | 66.4% |
| 5054723 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.69 | 63.0 | 5.31e-01 | 98.1% | 67.9% |
| 4267135 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.68 | 60.0 | 5.16e-01 | 98.1% | 63.5% |
| 3436634 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.68 | 59.0 | 4.23e-01 | 96.3% | 49.0% |
| 3457692 | 3419.1.1.0 ↗ | alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA | 0.68 | 54.0 | 5.59e-01 | 85.2% | 92.0% |
| 5080109 | 101.1.2.139 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_23 | 0.65 | 56.0 | 5.10e-01 | 100.0% | 94.7% |
| 1822789 | 601.21.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › FAD_SOX | 0.63 | 52.0 | 4.27e-01 | 98.1% | 54.6% |
| 3481141 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.63 | 55.0 | 4.02e-01 | 94.4% | 41.8% |
| 3601959 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.63 | 43.0 | 3.54e-01 | 74.1% | 38.2% |
| 4936551 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.62 | 52.0 | 3.51e-01 | 94.4% | 64.4% |
| 4232718 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.61 | 48.0 | 3.97e-01 | 87.0% | 97.0% |
| 4937823 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.61 | 46.0 | 3.84e-01 | 83.3% | 48.0% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.60 | 47.0 | 4.51e-01 | 87.0% | 72.3% |
| 5052463 | 3273.1.1.0 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins | 0.60 | 51.0 | 4.53e-01 | 98.1% | 80.0% |
| 3171699 | 101.1.1.133 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 | 0.59 | 41.0 | 3.38e-01 | 74.1% | 79.0% |
| 3290816 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 47.0 | 2.58e-01 | 96.3% | 11.3% |
| 3679473 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.58 | 43.0 | 3.27e-01 | 81.5% | 55.0% |
| 3743739 | 2485.1.1.49 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 | 0.55 | 42.0 | 3.02e-01 | 85.2% | 26.9% |
D3
medium
residues 143-229
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6sdkA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.85 | 78.0 | 7.51e-01 | 100.0% | 87.6% |
| 6s6hA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.80 | 67.0 | 6.18e-01 | 96.6% | 72.5% |
| 1f4qA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 46.0 | 3.77e-01 | 72.4% | 75.2% |
| 1pujA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.61 | 31.0 | 3.02e-01 | 70.1% | 45.2% |
| 4ociA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 38.0 | 4.22e-01 | 77.0% | 95.5% |
| 3fwbA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 36.0 | 3.73e-01 | 74.7% | 73.2% |
| 7dl9B02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.50 | 34.0 | 2.69e-01 | 71.3% | 84.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073613 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.80 | 73.0 | 6.55e-01 | 100.0% | 72.5% |
| 2324002 | 1184.1.1.0 ↗ | 0.63 | 56.0 | 5.06e-01 | 97.7% | 87.3% | |
| 4136873 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.63 | 36.0 | 4.09e-01 | 83.9% | 75.4% |
| None | — | 0.59 | 31.0 | 3.28e-01 | 73.6% | 56.0% | |
| 4044019 | 108.1.1.171 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_8, CAPN13-like_C_EFh | 0.55 | 39.0 | 3.38e-01 | 75.9% | 86.0% |
| 3919584 | 108.1.1.153 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_8 | 0.55 | 39.0 | 3.24e-01 | 75.9% | 73.7% |
| 3792735 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.54 | 43.0 | 2.74e-01 | 83.9% | 21.1% |
| 4510352 | 110.1.1.22 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C, DEATH_SH3BP4 | 0.53 | 40.0 | 3.55e-01 | 83.9% | 80.0% |
| 3725419 | 148.1.3.268 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › F-box | 0.53 | 40.0 | 2.76e-01 | 81.6% | 88.2% |
| 3575456 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.53 | 42.0 | 4.20e-01 | 85.1% | 91.1% |
| 4193146 | 191.1.1.10 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 | 0.51 | 37.0 | 3.22e-01 | 75.9% | 96.3% |