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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00136
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00136
Identity
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-145
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.56 | 44.0 | 4.35e-01 | 83.7% | 86.7% |
| 7jvhC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 40.0 | 2.79e-01 | 77.2% | 88.3% |
| 4at7A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 48.0 | 4.08e-01 | 97.8% | 92.1% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 41.0 | 3.80e-01 | 100.0% | 62.5% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 41.0 | 3.54e-01 | 82.6% | 87.1% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.54 | 39.0 | 4.06e-01 | 82.6% | 83.3% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 2.95e-01 | 87.0% | 82.0% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.53 | 39.0 | 3.40e-01 | 78.3% | 86.4% |
| 6fucA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 38.0 | 3.89e-01 | 83.7% | 81.4% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 41.0 | 3.94e-01 | 87.0% | 91.7% |
| 3ct9B01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 44.0 | 3.38e-01 | 98.9% | 95.0% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 41.0 | 3.87e-01 | 87.0% | 89.1% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 36.0 | 2.95e-01 | 97.8% | 37.8% |
| 2durB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.14e-01 | 90.2% | 58.1% |
| 2rk0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 35.0 | 3.24e-01 | 71.7% | 90.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973641 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.61 | 45.0 | 3.51e-01 | 77.2% | 70.3% |
| 1889974 | 4081.1.1.6 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › LppM | 0.60 | 43.0 | 3.52e-01 | 73.9% | 90.6% |
| 3971393 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.59 | 42.0 | 3.30e-01 | 75.0% | 70.8% |
| 3967389 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.59 | 44.0 | 3.47e-01 | 79.3% | 70.0% |
| 3968949 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.58 | 43.0 | 3.43e-01 | 77.2% | 68.9% |
| 3603029 | 873.1.1.11 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27343 | 0.57 | 39.0 | 3.48e-01 | 70.7% | 97.8% |
| 3969599 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.57 | 42.0 | 3.33e-01 | 78.3% | 98.5% |
| 3972907 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.56 | 42.0 | 3.34e-01 | 80.4% | 70.0% |
| 3285963 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.56 | 42.0 | 3.28e-01 | 78.3% | 70.8% |
| 3973671 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 41.0 | 3.26e-01 | 79.3% | 69.0% |
| 3963078 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.55 | 39.0 | 4.03e-01 | 76.1% | 78.8% |
| 3291627 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.55 | 41.0 | 3.24e-01 | 79.3% | 67.8% |
| 4993093 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.54 | 48.0 | 3.33e-01 | 100.0% | 66.7% |
| 3510695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 41.0 | 4.37e-01 | 89.1% | 93.8% |
| 3188399 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 42.0 | 3.55e-01 | 83.7% | 85.6% |
| 5009572 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 37.0 | 3.31e-01 | 71.7% | 83.7% |
| 4224940 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.53 | 43.0 | 3.24e-01 | 93.5% | 99.3% |
| 3956964 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.53 | 40.0 | 3.16e-01 | 80.4% | 69.8% |
| 3443786 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 37.0 | 3.99e-01 | 73.9% | 93.3% |
| 3688346 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 42.0 | 3.22e-01 | 92.4% | 97.1% |
| 3739127 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.51 | 41.0 | 3.59e-01 | 87.0% | 68.6% |
| 3601826 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.50 | 38.0 | 3.04e-01 | 81.5% | 79.0% |
| 5063704 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 32.0 | 3.57e-01 | 73.9% | 90.8% |
| 4954912 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.50 | 40.0 | 3.34e-01 | 90.2% | 54.3% |
D2
medium
residues 153-210
Domain cluster:
representative