←Back to structures
SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00153
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00153
Identity
- Kingdom:
- phage
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-79
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.75 | 68.0 | 5.93e-01 | 100.0% | 97.4% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 59.0 | 5.92e-01 | 100.0% | 90.0% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 62.0 | 5.35e-01 | 100.0% | 84.3% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 59.0 | 5.53e-01 | 100.0% | 92.0% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 55.0 | 5.46e-01 | 100.0% | 89.0% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.65 | 52.0 | 5.41e-01 | 93.6% | 100.0% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 56.0 | 5.31e-01 | 98.7% | 92.6% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 54.0 | 5.34e-01 | 100.0% | 89.4% |
| 3bf4A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 54.0 | 5.10e-01 | 100.0% | 100.0% |
| 3lo3A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 5.16e-01 | 98.7% | 92.6% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 37.0 | 3.87e-01 | 89.7% | 63.9% |
| 2i8eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 51.0 | 5.21e-01 | 100.0% | 97.3% |
| 6c6uN00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.62 | 54.0 | 5.06e-01 | 100.0% | 85.7% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 49.0 | 4.84e-01 | 100.0% | 84.1% |
| 7vhqU01 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.60 | 52.0 | 4.60e-01 | 93.6% | 67.3% |
| 4yjmC00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.60 | 53.0 | 5.24e-01 | 100.0% | 95.2% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 36.0 | 3.98e-01 | 74.4% | 76.6% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.58 | 36.0 | 3.14e-01 | 70.5% | 42.1% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.57 | 51.0 | 4.87e-01 | 100.0% | 86.8% |
| 1xqiA00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.57 | 49.0 | 3.85e-01 | 100.0% | 91.8% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 47.0 | 4.19e-01 | 98.7% | 94.1% |
| 3hz6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 42.0 | 2.96e-01 | 85.9% | 96.4% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 34.0 | 3.43e-01 | 74.4% | 66.7% |
| 4zpxA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 38.0 | 3.64e-01 | 87.2% | 66.3% |
| 3c8eA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 3.14e-01 | 75.6% | 66.9% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 35.0 | 3.22e-01 | 71.8% | 89.2% |
| 3rbtA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 40.0 | 3.57e-01 | 88.5% | 65.8% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.50 | 35.0 | 3.71e-01 | 73.1% | 88.7% |
| 6h9xA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.50 | 38.0 | 3.53e-01 | 82.1% | 95.1% |
| 3cbuA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 39.0 | 3.31e-01 | 85.9% | 92.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984314 | 304.43.1.6 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M | 0.72 | 63.0 | 6.09e-01 | 98.7% | 96.7% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.72 | 65.0 | 4.42e-01 | 100.0% | 34.5% |
| 4946082 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.67 | 55.0 | 5.57e-01 | 98.7% | 94.7% |
| 5007807 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.65 | 56.0 | 5.29e-01 | 100.0% | 80.0% |
| 4033471 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.65 | 56.0 | 5.25e-01 | 98.7% | 78.9% |
| 5014372 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.62 | 54.0 | 4.42e-01 | 100.0% | 94.2% |
| 4092193 | 3755.4.1.53 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › CemA | 0.61 | 43.0 | 3.40e-01 | 84.6% | 36.8% |
| 3973208 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 38.0 | 3.94e-01 | 80.8% | 66.7% |
| 3503894 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.59 | 53.0 | 5.33e-01 | 100.0% | 100.0% |
| 4595959 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.59 | 51.0 | 5.13e-01 | 100.0% | 100.0% |
| 4928145 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.57 | 41.0 | 4.10e-01 | 76.9% | 72.5% |
| 4946571 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.56 | 47.0 | 3.48e-01 | 92.3% | 53.2% |
| 3715195 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.56 | 48.0 | 3.45e-01 | 97.4% | 31.7% |
| 4971705 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 4.73e-01 | 93.6% | 97.3% |
| 3838596 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.56 | 48.0 | 3.53e-01 | 94.9% | 57.6% |
| 3303649 | 3755.3.1.310 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA | 0.55 | 38.0 | 2.99e-01 | 80.8% | 32.9% |
| 3255897 | 212.1.1.34 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFL1 | 0.55 | 45.0 | 3.30e-01 | 89.7% | 48.4% |
| 3593272 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.54 | 36.0 | 3.03e-01 | 74.4% | 40.0% |
| 4199229 | 2007.2.2.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › Ssu72 | 0.53 | 45.0 | 3.39e-01 | 100.0% | 36.7% |
| 5082565 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 37.0 | 3.93e-01 | 76.9% | 84.3% |
| 3993970 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.50 | 42.0 | 2.75e-01 | 96.2% | 37.7% |
| 3598925 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.50 | 37.0 | 3.16e-01 | 78.2% | 84.6% |