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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00155

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00155

Identity

Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-44
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.62 51.0 4.27e-01 100.0% 51.2%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 47.0 4.50e-01 100.0% 80.0%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.46e-01 97.6% 85.7%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 40.0 3.46e-01 92.7% 50.6%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.17e-01 97.6% 78.8%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 2.83e-01 100.0% 88.3%
6vhyC01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 36.0 2.23e-01 90.2% 29.7%
2v5tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.38e-01 97.6% 73.4%
2zotC00 2.60.40.4060 Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain 0.51 40.0 2.93e-01 97.6% 74.3%
4qzvB02 2.20.210.30 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.51 38.0 3.51e-01 100.0% 88.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604642 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 69.0 6.69e-01 100.0% 84.4%
5016960 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 68.0 6.60e-01 100.0% 86.7%
3284102 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.78 62.0 5.88e-01 100.0% 74.0%
3278973 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.76 62.0 6.26e-01 100.0% 95.0%
4929218 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 64.0 6.21e-01 100.0% 86.7%
5016177 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 64.0 6.04e-01 100.0% 80.0%
5052959 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 63.0 5.79e-01 100.0% 72.7%
4189117 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 59.0 5.60e-01 100.0% 78.0%
4990345 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 60.0 5.68e-01 100.0% 88.0%
4928795 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 57.0 5.62e-01 100.0% 91.1%
4971396 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 58.0 5.36e-01 100.0% 74.5%
3441684 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.67 57.0 5.24e-01 100.0% 78.2%
3719787 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 54.0 5.49e-01 97.6% 97.5%
4942778 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 58.0 5.45e-01 100.0% 82.0%
4219081 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.67 55.0 5.39e-01 100.0% 88.9%
4424001 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.67 51.0 3.76e-01 100.0% 30.0%
4948014 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 57.0 5.40e-01 100.0% 84.0%
5019693 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.67 57.0 5.38e-01 100.0% 84.0%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 54.0 5.19e-01 100.0% 88.0%
4930203 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.66 55.0 5.11e-01 100.0% 76.4%
4993599 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.65 56.0 4.01e-01 100.0% 33.6%
4980605 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 53.0 5.18e-01 97.6% 95.6%
3600775 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 50.0 4.91e-01 100.0% 93.3%
3457574 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.60 47.0 4.28e-01 100.0% 64.6%
4995785 221.3.1.0 ↗ a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.57 43.0 4.17e-01 100.0% 94.5%
3825960 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.53 39.0 3.94e-01 100.0% 95.6%
3932150 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 39.0 3.43e-01 100.0% 62.7%