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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00171

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00171

Identity

Kingdom:
phage

Quality

73.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-58
PDB
D2 high residues 61-125
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27402.1 best Y4mA_C 46.1 5.40e-12 93.8% 80.3%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.38e-01 76.9% 88.7%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.02e-01 78.5% 75.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.11e-01 78.5% 87.5%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.92e-01 76.9% 87.7%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.69 53.0 4.19e-01 83.1% 68.4%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.72e-01 89.2% 93.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 4.72e-01 75.4% 65.8%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.15e-01 76.9% 58.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.19e-01 81.5% 85.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.57e-01 76.9% 84.0%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 4.68e-01 73.8% 95.3%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 47.0 5.10e-01 98.5% 90.7%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.63 44.0 4.19e-01 73.8% 67.1%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.62 55.0 4.94e-01 100.0% 93.3%
2zbwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 4.20e-01 93.8% 95.1%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.06e-01 92.3% 40.8%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 48.0 2.97e-01 90.8% 40.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.90e-01 98.5% 88.9%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 50.0 3.26e-01 100.0% 76.6%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 4.68e-01 98.5% 87.3%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 48.0 3.25e-01 100.0% 78.6%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 47.0 3.85e-01 93.8% 71.9%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 39.0 2.64e-01 72.3% 19.0%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 2.81e-01 90.8% 41.3%
2v5mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.58e-01 78.5% 76.9%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 48.0 4.12e-01 96.9% 79.4%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 3.71e-01 84.6% 76.1%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 47.0 3.21e-01 100.0% 94.9%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 45.0 4.07e-01 93.8% 83.0%
3f1sB03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 39.0 3.38e-01 78.5% 84.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 46.0 3.11e-01 100.0% 86.9%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 44.0 3.96e-01 93.8% 81.6%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 39.0 2.58e-01 75.4% 29.7%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 45.0 3.06e-01 100.0% 73.7%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 3.41e-01 84.6% 87.8%
2prvA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.54 46.0 3.56e-01 100.0% 61.4%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.53 37.0 3.13e-01 75.4% 42.5%
2wylC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 36.0 2.39e-01 72.3% 21.5%
1h8uB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 45.0 3.76e-01 100.0% 93.1%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 41.0 2.80e-01 98.5% 67.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 3.80e-01 100.0% 74.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284223 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 59.0 5.82e-01 76.9% 94.3%
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 57.0 6.16e-01 73.8% 92.7%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 55.0 5.69e-01 75.4% 95.0%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 55.0 5.57e-01 76.9% 90.6%
3924975 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.74 53.0 5.00e-01 76.9% 76.2%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 4.80e-01 78.5% 70.0%
3720772 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 50.0 4.94e-01 73.8% 88.6%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.00e-01 75.4% 90.0%
3766659 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 53.0 5.54e-01 80.0% 90.0%
3191269 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 51.0 4.97e-01 75.4% 90.0%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 52.0 4.55e-01 80.0% 73.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 52.0 4.60e-01 80.0% 68.4%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 51.0 4.86e-01 76.9% 74.7%
3481344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.26e-01 81.5% 95.4%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 50.0 4.40e-01 76.9% 66.3%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 50.0 4.35e-01 78.5% 67.0%
3199259 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.67 48.0 4.89e-01 76.9% 81.5%
4220608 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.67 48.0 4.66e-01 80.0% 66.7%
3994608 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 44.0 3.05e-01 70.8% 21.4%
3238942 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 43.0 2.78e-01 72.3% 14.9%
3901130 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 43.0 2.74e-01 72.3% 15.2%
3494972 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 44.0 2.86e-01 80.0% 16.0%
4949244 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.60 41.0 3.15e-01 72.3% 38.7%
4946112 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.60 42.0 2.89e-01 75.4% 24.9%
5054047 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 44.0 4.27e-01 81.5% 93.3%
5014465 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.59 42.0 2.82e-01 75.4% 24.2%
3540675 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 39.0 2.54e-01 70.8% 13.6%
3516482 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 47.0 3.27e-01 100.0% 88.5%
4004090 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.57 47.0 3.16e-01 100.0% 72.7%
3471577 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.56 46.0 3.07e-01 100.0% 75.8%
3874005 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.56 46.0 3.11e-01 100.0% 73.5%
3941161 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.56 46.0 3.05e-01 100.0% 67.9%
3566692 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.55 45.0 3.01e-01 100.0% 69.7%
3866523 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.55 45.0 3.09e-01 100.0% 78.0%
5009573 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.55 39.0 2.67e-01 75.4% 26.0%
3276604 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.55 44.0 2.94e-01 92.3% 43.7%
5067776 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.54 44.0 3.11e-01 98.5% 86.2%
3811228 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 48.0 3.11e-01 100.0% 38.7%
3868651 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 44.0 3.00e-01 100.0% 59.3%
3569280 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 43.0 2.85e-01 92.3% 26.9%
None 0.54 41.0 2.78e-01 87.7% 27.3%
3820157 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.54 47.0 3.42e-01 100.0% 60.0%
4974332 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.54 36.0 2.63e-01 70.8% 27.9%
3485363 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 44.0 2.94e-01 100.0% 55.9%
3765906 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 44.0 2.95e-01 100.0% 57.5%
5054512 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.53 36.0 2.59e-01 70.8% 26.5%
3578911 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.53 42.0 3.06e-01 92.3% 41.4%
None 0.53 46.0 3.07e-01 100.0% 28.1%
4940708 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.53 36.0 2.56e-01 70.8% 27.6%
3754571 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 44.0 2.92e-01 100.0% 52.3%
3908140 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.52 42.0 2.81e-01 98.5% 69.9%
3808306 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 45.0 2.92e-01 100.0% 37.7%
3928729 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 45.0 3.20e-01 98.5% 97.6%
5052402 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.52 35.0 2.37e-01 70.8% 24.2%
3914807 5.1.3.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.52 42.0 2.84e-01 98.5% 52.4%
None 0.51 44.0 3.07e-01 98.5% 44.0%
3301560 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 44.0 2.84e-01 100.0% 81.4%
3482934 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 42.0 2.81e-01 98.5% 66.9%
3805018 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 45.0 2.88e-01 100.0% 34.3%
3778866 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 45.0 2.87e-01 100.0% 34.2%
5028078 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.51 44.0 2.85e-01 95.4% 50.0%
4941375 3772.1.1.0 beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain 0.51 39.0 2.95e-01 84.6% 72.7%
3904706 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 45.0 3.06e-01 100.0% 51.3%
3480402 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 44.0 2.85e-01 100.0% 39.0%
3905718 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.50 44.0 2.82e-01 100.0% 34.7%
4988847 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 41.0 3.95e-01 100.0% 78.7%