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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00192
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00192
Identity
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-71
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lizA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.71 | 64.0 | 4.96e-01 | 98.5% | 56.5% |
| 5ynrA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 53.0 | 4.31e-01 | 97.0% | 55.1% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 47.0 | 4.65e-01 | 81.8% | 73.6% |
| 2kvkA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 52.0 | 4.15e-01 | 97.0% | 50.7% |
| 1rlhA02 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.62 | 43.0 | 3.80e-01 | 74.2% | 100.0% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 46.0 | 4.24e-01 | 81.8% | 97.8% |
| 1tljB00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.59 | 46.0 | 3.35e-01 | 86.4% | 55.9% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.58 | 44.0 | 3.78e-01 | 81.8% | 61.0% |
| 2qyxA02 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.58 | 43.0 | 3.69e-01 | 81.8% | 85.8% |
| 1vq0A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.58 | 47.0 | 3.40e-01 | 100.0% | 77.3% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 40.0 | 3.12e-01 | 77.3% | 47.0% |
| 4wtxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 43.0 | 3.82e-01 | 81.8% | 59.8% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 37.0 | 2.82e-01 | 71.2% | 28.0% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 41.0 | 3.30e-01 | 80.3% | 46.9% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.56 | 42.0 | 3.65e-01 | 81.8% | 56.6% |
| 7ox5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 42.0 | 3.67e-01 | 81.8% | 68.9% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 45.0 | 3.69e-01 | 100.0% | 88.4% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 43.0 | 3.40e-01 | 86.4% | 95.2% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.55 | 41.0 | 3.20e-01 | 84.8% | 79.5% |
| 3kyhC01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.55 | 46.0 | 3.21e-01 | 98.5% | 85.8% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.76e-01 | 81.8% | 63.6% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.54 | 38.0 | 4.12e-01 | 89.4% | 89.1% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 44.0 | 3.25e-01 | 90.9% | 87.4% |
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.54 | 38.0 | 3.78e-01 | 83.3% | 72.1% |
| 3ethA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 33.0 | 3.43e-01 | 100.0% | 64.5% |
| 3up1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.55e-01 | 83.3% | 60.6% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 38.0 | 3.14e-01 | 80.3% | 85.5% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.53 | 46.0 | 3.90e-01 | 100.0% | 68.1% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 41.0 | 2.66e-01 | 87.9% | 83.7% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.71e-01 | 93.9% | 79.1% |
| 4owpB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 42.0 | 3.35e-01 | 100.0% | 77.1% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 42.0 | 3.46e-01 | 90.9% | 57.1% |
| 3g7dA03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 40.0 | 3.29e-01 | 84.8% | 73.4% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 39.0 | 3.29e-01 | 84.8% | 91.1% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 38.0 | 3.17e-01 | 78.8% | 62.2% |
| 4n2cA02 | 2.60.40.1700 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain | 0.52 | 45.0 | 3.33e-01 | 97.0% | 78.6% |
| 5d1oA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 44.0 | 4.28e-01 | 100.0% | 98.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 34.0 | 3.36e-01 | 72.7% | 75.0% |
| 1rniA01 | 3.30.720.160 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal | 0.50 | 37.0 | 3.67e-01 | 80.3% | 78.6% |
| 3orqA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.50 | 38.0 | 3.87e-01 | 81.8% | 100.0% |
| 4ev0D01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 41.0 | 3.26e-01 | 90.9% | 49.6% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721982 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.80 | 54.0 | 4.78e-01 | 71.2% | 97.9% |
| 5000446 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.78 | 54.0 | 4.84e-01 | 72.7% | 97.8% |
| 3510263 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.66 | 57.0 | 4.42e-01 | 97.0% | 56.7% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.65 | 49.0 | 5.05e-01 | 81.8% | 93.3% |
| 4021702 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.64 | 52.0 | 3.54e-01 | 90.9% | 54.5% |
| 3939695 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 48.0 | 4.39e-01 | 81.8% | 60.0% |
| 3787050 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 44.0 | 3.96e-01 | 72.7% | 64.2% |
| 3187199 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.64 | 53.0 | 4.31e-01 | 97.0% | 58.0% |
| 3929801 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.64 | 50.0 | 4.40e-01 | 84.8% | 90.5% |
| 4967498 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.63 | 54.0 | 3.59e-01 | 97.0% | 38.5% |
| 4971633 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.62 | 49.0 | 3.50e-01 | 90.9% | 52.0% |
| 3742638 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.62 | 51.0 | 4.20e-01 | 97.0% | 57.8% |
| 3821082 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 43.0 | 3.87e-01 | 74.2% | 56.8% |
| 3996439 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.61 | 49.0 | 4.04e-01 | 87.9% | 51.7% |
| 3403216 | 224.1.1.5 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › DUF7904 | 0.61 | 47.0 | 3.98e-01 | 83.3% | 50.0% |
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.61 | 47.0 | 4.05e-01 | 86.4% | 90.0% |
| 3218957 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.60 | 47.0 | 3.92e-01 | 84.8% | 76.5% |
| 4973338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.60 | 45.0 | 3.03e-01 | 83.3% | 79.6% |
| 3405565 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.59 | 46.0 | 4.10e-01 | 84.8% | 88.4% |
| 5025206 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.59 | 42.0 | 4.29e-01 | 75.8% | 100.0% |
| 3893460 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 3.91e-01 | 81.8% | 61.0% |
| 3478358 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 43.0 | 3.57e-01 | 80.3% | 64.0% |
| 3803755 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.58 | 37.0 | 3.59e-01 | 75.8% | 56.0% |
| 4028488 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.58 | 48.0 | 3.87e-01 | 97.0% | 45.7% |
| 3708602 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.58 | 50.0 | 3.94e-01 | 100.0% | 55.2% |
| 3471798 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.57 | 46.0 | 3.80e-01 | 87.9% | 53.3% |
| 3722266 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 44.0 | 3.71e-01 | 87.9% | 91.2% |
| 3221746 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 43.0 | 3.04e-01 | 84.8% | 71.7% |
| 4964141 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.57 | 37.0 | 3.39e-01 | 72.7% | 50.0% |
| 3453549 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 44.0 | 3.78e-01 | 89.4% | 81.7% |
| 3308207 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.56 | 40.0 | 2.69e-01 | 75.8% | 59.6% |
| 3783094 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.56 | 48.0 | 4.11e-01 | 100.0% | 67.5% |
| 3593996 | 228.1.1.0 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C | 0.56 | 47.0 | 3.79e-01 | 100.0% | 55.6% |
| 3197773 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.55 | 41.0 | 2.74e-01 | 83.3% | 29.4% |
| 3224990 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 3.51e-01 | 81.8% | 65.2% |
| 3577596 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.54 | 37.0 | 2.94e-01 | 72.7% | 70.3% |
| 3494596 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 42.0 | 3.15e-01 | 89.4% | 39.4% |
| 4284041 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 42.0 | 3.13e-01 | 92.4% | 38.5% |
| 3544717 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 44.0 | 3.48e-01 | 93.9% | 83.4% |
| 3449844 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.53 | 42.0 | 2.98e-01 | 87.9% | 40.5% |
| 4116673 | 11.1.4.33 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF5119 | 0.52 | 40.0 | 3.14e-01 | 81.8% | 62.1% |
| 3516524 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.52 | 43.0 | 3.34e-01 | 90.9% | 55.9% |
| 1117716 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.52 | 42.0 | 3.46e-01 | 90.9% | 57.1% |
| 3255162 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.51 | 37.0 | 3.13e-01 | 78.8% | 51.3% |
| 3619730 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.50 | 38.0 | 3.55e-01 | 86.4% | 87.8% |
| 5030919 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.50 | 36.0 | 3.14e-01 | 80.3% | 47.0% |
| 4583106 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.50 | 44.0 | 3.55e-01 | 100.0% | 71.5% |