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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00227

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00227

Identity

Kingdom:
phage

Quality

66.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-106
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 49.0 3.43e-01 76.7% 42.3%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.66 46.0 3.74e-01 71.8% 72.8%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 48.0 3.36e-01 78.6% 42.7%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 48.0 3.30e-01 79.6% 37.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 34.0 4.14e-01 97.1% 84.1%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 48.0 3.35e-01 81.6% 48.6%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 48.0 3.36e-01 83.5% 54.3%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 3.18e-01 79.6% 35.1%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 47.0 3.37e-01 83.5% 49.2%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 43.0 3.90e-01 74.8% 67.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 46.0 3.26e-01 82.5% 53.4%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 45.0 3.01e-01 83.5% 42.0%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 45.0 3.33e-01 82.5% 55.6%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 4.21e-01 83.5% 94.1%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.71e-01 77.7% 65.2%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 36.0 3.78e-01 78.6% 68.4%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 44.0 2.86e-01 83.5% 33.7%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.99e-01 80.6% 93.2%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.70e-01 71.8% 81.2%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 42.0 2.99e-01 77.7% 42.0%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.51e-01 70.9% 92.3%
3dukA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.14e-01 84.5% 97.6%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 39.0 3.01e-01 72.8% 92.5%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 3.63e-01 78.6% 63.0%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.55 42.0 4.02e-01 82.5% 93.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.55 42.0 3.91e-01 82.5% 64.8%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.55 49.0 4.29e-01 97.1% 100.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.37e-01 95.1% 100.0%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 46.0 3.56e-01 93.2% 96.7%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.29e-01 96.1% 97.9%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.54 41.0 3.67e-01 82.5% 82.4%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.26e-01 76.7% 61.7%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.12e-01 98.1% 63.3%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 34.0 3.48e-01 88.3% 66.7%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 38.0 2.77e-01 78.6% 69.5%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 41.0 3.19e-01 84.5% 68.8%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 37.0 2.92e-01 76.7% 95.5%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.50 39.0 3.19e-01 84.5% 60.1%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 4.32e-01 99.0% 100.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3763123 5.1.4.371 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz 0.70 53.0 3.43e-01 78.6% 32.4%
2082805 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.70 34.0 3.61e-01 87.4% 51.1%
3851160 5.1.5.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz 0.69 53.0 3.24e-01 78.6% 23.9%
399504 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.67 49.0 3.42e-01 76.7% 42.3%
3804708 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.66 51.0 3.62e-01 81.6% 35.1%
3791149 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.66 50.0 3.40e-01 79.6% 35.6%
3393936 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.65 51.0 3.45e-01 81.6% 39.7%
4024178 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 49.0 3.24e-01 78.6% 33.7%
3873021 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.65 49.0 3.18e-01 81.6% 26.7%
3926253 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 46.0 3.13e-01 74.8% 26.6%
3995515 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 51.0 3.59e-01 83.5% 42.9%
3510862 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.64 50.0 3.39e-01 81.6% 44.1%
3763650 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.64 49.0 3.41e-01 81.6% 41.1%
3917795 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.64 49.0 3.39e-01 81.6% 39.4%
3670829 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.63 50.0 3.53e-01 84.5% 52.1%
3584285 5.1.11.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N 0.63 49.0 3.28e-01 83.5% 48.6%
3622886 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 49.0 2.94e-01 83.5% 26.2%
3806929 331.9.1.1 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.63 43.0 4.08e-01 78.6% 58.4%
3272078 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 46.0 3.35e-01 76.7% 44.3%
3929694 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.33e-01 91.3% 86.2%
3804152 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.62 49.0 3.38e-01 83.5% 50.8%
4960423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.41e-01 83.5% 42.1%
3401205 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 3.05e-01 80.6% 31.7%
3527512 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.61 45.0 4.03e-01 75.7% 72.1%
3519971 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.61 44.0 3.72e-01 75.7% 65.1%
3788120 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 45.0 3.11e-01 77.7% 28.2%
3822084 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.61 42.0 4.07e-01 70.9% 93.0%
3459442 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.61 45.0 4.14e-01 77.7% 97.8%
4348187 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 45.0 4.93e-01 83.5% 95.3%
3588583 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 47.0 4.15e-01 80.6% 70.3%
4957034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 47.0 3.24e-01 83.5% 36.7%
3933012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.34e-01 96.1% 77.1%
3183597 5.1.4.80 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.59 51.0 3.31e-01 92.2% 64.7%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 38.0 3.98e-01 77.7% 70.5%
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 44.0 4.36e-01 79.6% 76.4%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 53.0 3.76e-01 99.0% 56.4%
None — 0.59 45.0 3.31e-01 80.6% 44.2%
3330850 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.59 41.0 4.17e-01 71.8% 100.0%
3789395 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.59 46.0 3.21e-01 83.5% 38.2%
3938729 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 45.0 3.29e-01 82.5% 48.4%
4029737 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.03e-01 95.1% 16.5%
3339570 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 46.0 3.47e-01 86.4% 56.0%
3927891 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 39.0 3.64e-01 71.8% 80.0%
4028149 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 40.0 4.12e-01 77.7% 80.0%
3709987 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 41.0 3.79e-01 84.5% 60.8%
164598 331.15.1.1 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.56 36.0 3.63e-01 78.6% 63.0%
3523657 5.1.4.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.55 49.0 3.33e-01 99.0% 92.4%
3923382 5.1.11.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N 0.55 47.0 3.16e-01 98.1% 56.2%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.55 42.0 4.18e-01 83.5% 82.7%
3257412 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.55 38.0 3.73e-01 77.7% 65.2%
3825573 5.1.5.184 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR11_2nd 0.54 49.0 3.26e-01 99.0% 53.8%
3373579 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.54 49.0 3.30e-01 100.0% 52.9%
5033737 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 40.0 3.30e-01 77.7% 92.0%
3678591 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.54 42.0 4.51e-01 84.5% 100.0%
3744021 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.53 39.0 3.85e-01 78.6% 70.9%
3324058 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.23e-01 99.0% 87.2%
993431 3264.1.1.0 ↗ 0.53 35.0 3.07e-01 77.7% 44.2%
4938029 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 43.0 4.41e-01 87.4% 94.9%
3246034 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.52 42.0 3.74e-01 87.4% 75.3%
3459971 5084.5.3.9 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › PF28611 0.52 35.0 2.48e-01 81.6% 23.3%
5075528 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.52 39.0 4.14e-01 83.5% 90.0%
4339414 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 44.0 4.55e-01 94.2% 98.0%
4986976 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 37.0 3.57e-01 78.6% 95.0%
3596002 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 38.0 3.57e-01 81.6% 66.9%
D2 high residues 127-186
PDB