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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00237
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00237
Identity
- Kingdom:
- phage
Quality
91.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 56.0 | 4.97e-01 | 93.4% | 92.1% |
| 4me2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 57.0 | 3.97e-01 | 100.0% | 29.9% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 51.0 | 3.27e-01 | 95.1% | 22.1% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 51.0 | 3.20e-01 | 100.0% | 26.9% |
| 4at7A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 42.0 | 3.16e-01 | 80.3% | 55.9% |
| 4di1B01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 44.0 | 3.05e-01 | 85.2% | 56.3% |
| 4a2lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 50.0 | 3.17e-01 | 100.0% | 23.3% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 49.0 | 3.14e-01 | 100.0% | 23.4% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 49.0 | 3.11e-01 | 100.0% | 53.9% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.54 | 42.0 | 3.79e-01 | 96.7% | 60.2% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.54 | 38.0 | 3.19e-01 | 73.8% | 55.3% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.36e-01 | 100.0% | 70.8% |
| 5ib0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.52e-01 | 96.7% | 91.2% |
| 3peaF00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 41.0 | 2.70e-01 | 85.2% | 45.1% |
| 2d4oA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.59e-01 | 98.4% | 88.4% |
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.52 | 40.0 | 3.02e-01 | 83.6% | 63.1% |
| 1chkA02 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.52 | 39.0 | 3.52e-01 | 86.9% | 66.3% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 43.0 | 3.55e-01 | 95.1% | 70.9% |
| 2bszA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.51 | 42.0 | 3.17e-01 | 96.7% | 37.1% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 41.0 | 2.93e-01 | 100.0% | 29.0% |
| 1qi9A00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.50 | 39.0 | 2.34e-01 | 91.8% | 48.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607978 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.64 | 45.0 | 3.65e-01 | 83.6% | 39.1% |
| 3284793 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.62 | 44.0 | 3.88e-01 | 77.0% | 95.8% |
| 3411886 | 304.112.1.2 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 41.0 | 3.00e-01 | 72.1% | 50.6% |
| 3597913 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.58 | 51.0 | 2.97e-01 | 100.0% | 61.4% |
| 3601319 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 51.0 | 2.96e-01 | 100.0% | 59.3% |
| 3999647 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 48.0 | 3.99e-01 | 98.4% | 52.2% |
| 3240950 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.56 | 43.0 | 3.02e-01 | 93.4% | 23.9% |
| 3260328 | 2002.1.1.21 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PI-PLC-X | 0.55 | 47.0 | 3.00e-01 | 95.1% | 38.0% |
| 4029336 | 109.4.1.363 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25 | 0.55 | 42.0 | 2.53e-01 | 82.0% | 26.4% |
| None | — | 0.54 | 47.0 | 3.01e-01 | 100.0% | 33.3% | |
| 4424957 | 3804.1.1.0 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain | 0.54 | 41.0 | 3.09e-01 | 88.5% | 98.9% |
| 3980976 | 213.1.1.92 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Mig-14 | 0.53 | 45.0 | 3.43e-01 | 100.0% | 86.3% |
| 4278105 | 633.23.1.17 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA | 0.53 | 42.0 | 2.97e-01 | 91.8% | 27.0% |
| 4961225 | 213.5.1.1 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like | 0.53 | 46.0 | 3.99e-01 | 98.4% | 100.0% |
| 3408608 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.52 | 43.0 | 3.51e-01 | 95.1% | 62.5% |
| 3936217 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 2.60e-01 | 100.0% | 17.2% |
| 3485789 | 2006.1.1.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase | 0.52 | 40.0 | 3.39e-01 | 88.5% | 58.4% |
| 4022955 | 3559.1.1.50 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › PF28561 | 0.50 | 42.0 | 3.15e-01 | 95.1% | 97.0% |
| 4875911 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.50 | 43.0 | 2.85e-01 | 96.7% | 85.4% |