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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00240
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-83
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00152__D12-82
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 37.0 | 3.30e-01 | 78.2% | 46.5% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.55 | 39.0 | 3.93e-01 | 75.6% | 81.5% |
| 2g7zA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.55 | 48.0 | 4.23e-01 | 100.0% | 87.5% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 46.0 | 4.66e-01 | 100.0% | 97.4% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 37.0 | 3.76e-01 | 89.7% | 74.4% |
| 2lstA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 39.0 | 3.33e-01 | 79.5% | 74.6% |
| 4ckbD03 | 2.40.50.830 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 40.0 | 3.44e-01 | 85.9% | 94.8% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.51 | 44.0 | 3.81e-01 | 98.7% | 89.0% |
| 2kt9A01 | 3.30.390.140 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.51 | 43.0 | 4.06e-01 | 97.4% | 93.9% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 33.0 | 2.66e-01 | 87.2% | 31.9% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.51 | 39.0 | 3.28e-01 | 85.9% | 64.6% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.51 | 44.0 | 4.14e-01 | 100.0% | 93.9% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 34.0 | 2.94e-01 | 70.5% | 89.6% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.50 | 43.0 | 3.50e-01 | 98.7% | 94.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236987 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 50.0 | 4.39e-01 | 98.7% | 53.9% |
| 3170080 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.64 | 49.0 | 4.64e-01 | 100.0% | 68.4% |
| 7726 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.58 | 38.0 | 4.19e-01 | 85.9% | 89.7% |
| 3505303 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 46.0 | 4.29e-01 | 97.4% | 69.0% |
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.57 | 43.0 | 4.45e-01 | 83.3% | 88.0% |
| 3705941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 41.0 | 4.14e-01 | 89.7% | 78.8% |
| 3983036 | 2484.1.1.119 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 | 0.55 | 41.0 | 4.32e-01 | 100.0% | 98.5% |
| 3217379 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.55 | 42.0 | 4.00e-01 | 89.7% | 69.5% |
| 3508171 | 3392.1.1.1 ↗ | a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › PAP_PilO | 0.54 | 48.0 | 3.78e-01 | 100.0% | 47.3% |
| 3221883 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 36.0 | 3.02e-01 | 70.5% | 74.8% |
| 4451157 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 45.0 | 3.33e-01 | 98.7% | 60.9% |
| 4946414 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.53 | 46.0 | 4.01e-01 | 100.0% | 88.6% |
| 3986085 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 42.0 | 3.99e-01 | 97.4% | 73.7% |
| 3911245 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 38.0 | 3.44e-01 | 87.2% | 54.5% |
| 4133401 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.53 | 47.0 | 3.05e-01 | 100.0% | 50.4% |
| 3615430 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 41.0 | 3.86e-01 | 87.2% | 83.0% |
| 3230101 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.53 | 47.0 | 3.65e-01 | 100.0% | 47.6% |
| 3514681 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 35.0 | 3.87e-01 | 78.2% | 90.0% |
| 4986795 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.52 | 45.0 | 3.63e-01 | 100.0% | 67.3% |
| 4221376 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 44.0 | 3.83e-01 | 100.0% | 87.7% |
| 3675008 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.52 | 45.0 | 3.56e-01 | 100.0% | 56.5% |
| 3294876 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.51 | 44.0 | 3.40e-01 | 100.0% | 72.3% |
| 4103800 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 43.0 | 3.83e-01 | 98.7% | 84.2% |
| 3718455 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 43.0 | 3.81e-01 | 93.6% | 72.8% |
| 4937627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.85e-01 | 85.9% | 86.7% |
| 4505784 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 42.0 | 3.74e-01 | 97.4% | 85.8% |
| 4639619 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.50 | 42.0 | 3.52e-01 | 97.4% | 88.3% |
D2
medium
residues 100-140
Domain cluster:
representative