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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00280
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00280
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 103-173
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.63 | 47.0 | 3.71e-01 | 100.0% | 37.7% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.55 | 35.0 | 3.33e-01 | 94.4% | 52.3% |
| 2qzuA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 37.0 | 3.51e-01 | 93.0% | 58.8% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 42.0 | 3.94e-01 | 98.6% | 68.5% |
| 3os7A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 43.0 | 2.87e-01 | 94.4% | 98.5% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 3.68e-01 | 97.2% | 93.6% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 44.0 | 3.00e-01 | 100.0% | 76.2% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.51 | 42.0 | 2.77e-01 | 91.5% | 60.0% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.50 | 32.0 | 3.03e-01 | 93.0% | 51.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3630423 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.66 | 45.0 | 4.21e-01 | 91.5% | 58.8% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.64 | 39.0 | 3.58e-01 | 88.7% | 45.3% |
| 5794 | 295.1.1.7 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP | 0.63 | 47.0 | 3.71e-01 | 100.0% | 37.7% |
| 3925491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 43.0 | 3.12e-01 | 100.0% | 25.9% |
| 3450584 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 47.0 | 3.09e-01 | 94.4% | 27.9% |
| 3404845 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 44.0 | 4.03e-01 | 100.0% | 66.3% |
| 3940847 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.54 | 41.0 | 3.66e-01 | 100.0% | 55.5% |
| 141014 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.53 | 43.0 | 2.87e-01 | 94.4% | 98.2% |
| 3523834 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.53 | 45.0 | 2.89e-01 | 95.8% | 24.4% |
| 3440815 | 5.1.11.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like | 0.53 | 45.0 | 2.92e-01 | 95.8% | 27.9% |
| 4016127 | 5.1.4.87 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD | 0.53 | 47.0 | 2.90e-01 | 100.0% | 33.6% |
| 3682839 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.52 | 44.0 | 2.91e-01 | 95.8% | 28.7% |
| 3884681 | 292.2.1.10 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N | 0.52 | 43.0 | 3.98e-01 | 95.8% | 83.2% |
| 3263647 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 43.0 | 3.71e-01 | 100.0% | 56.7% |
| 1148155 | 12.3.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N | 0.51 | 42.0 | 2.76e-01 | 91.5% | 57.8% |
| 3242374 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.51 | 43.0 | 3.79e-01 | 100.0% | 63.9% |
| 5028546 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 30.0 | 3.02e-01 | 76.1% | 58.6% |
| 3227948 | 2.1.1.235 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 | 0.50 | 40.0 | 3.90e-01 | 87.3% | 100.0% |
D2
medium
residues 1-48_73-102_174-184
Domain cluster:
rep: H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00097__D4-75