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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00288
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00288
Identity
- Kingdom:
- phage
Quality
67.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-66
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4esjA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 64.0 | 5.56e-01 | 100.0% | 61.1% |
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.72 | 61.0 | 4.93e-01 | 98.3% | 90.7% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.69 | 51.0 | 4.56e-01 | 81.0% | 70.2% |
| 2cq8A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.68 | 57.0 | 5.15e-01 | 96.6% | 81.5% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.67 | 58.0 | 5.22e-01 | 100.0% | 93.8% |
| 4k35A03 | 1.10.287.1170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › glycoside hydrolase family 81 endo-[beta] glucanase | 0.65 | 37.0 | 3.45e-01 | 100.0% | 45.7% |
| 1ngkB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 49.0 | 3.91e-01 | 84.5% | 85.0% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.64 | 56.0 | 4.80e-01 | 100.0% | 89.4% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.64 | 52.0 | 4.57e-01 | 91.4% | 80.7% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.62 | 53.0 | 4.63e-01 | 100.0% | 69.2% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 52.0 | 4.41e-01 | 98.3% | 56.9% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 52.0 | 4.60e-01 | 100.0% | 75.9% |
| 4pscA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 48.0 | 3.35e-01 | 94.8% | 92.3% |
| 2fgeA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 49.0 | 3.35e-01 | 100.0% | 58.6% |
| 4ga0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 41.0 | 3.19e-01 | 79.3% | 33.6% |
| 1dj2A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.57 | 47.0 | 4.06e-01 | 98.3% | 86.9% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.71e-01 | 82.8% | 76.0% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.43e-01 | 82.8% | 93.1% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.53 | 41.0 | 3.32e-01 | 91.4% | 88.3% |
| 1t0fC00 | 6.10.20.30 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.52 | 31.0 | 3.29e-01 | 84.5% | 67.3% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 39.0 | 3.63e-01 | 91.4% | 96.3% |
| 3t8qB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 42.0 | 3.48e-01 | 100.0% | 57.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419597 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.89 | 83.0 | 6.27e-01 | 100.0% | 48.8% |
| 3420459 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.88 | 83.0 | 6.71e-01 | 100.0% | 61.0% |
| 3643141 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.86 | 80.0 | 7.07e-01 | 100.0% | 77.5% |
| 3784532 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 77.0 | 6.40e-01 | 100.0% | 62.1% |
| 3929192 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.82 | 73.0 | 6.15e-01 | 98.3% | 68.4% |
| 3600922 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 70.0 | 7.00e-01 | 96.6% | 93.3% |
| 3929356 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 71.0 | 6.03e-01 | 100.0% | 71.6% |
| 4117405 | 101.1.1.228 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Eaf7 | 0.80 | 69.0 | 6.88e-01 | 98.3% | 93.3% |
| 3341306 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.80 | 71.0 | 5.51e-01 | 100.0% | 49.6% |
| 3817152 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 68.0 | 6.75e-01 | 96.6% | 93.3% |
| 3789417 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 70.0 | 5.55e-01 | 100.0% | 52.2% |
| 4660104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 67.0 | 6.44e-01 | 98.3% | 87.7% |
| 3410177 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 65.0 | 5.40e-01 | 100.0% | 56.0% |
| 3696367 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 65.0 | 6.03e-01 | 100.0% | 78.7% |
| 3781058 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 60.0 | 6.14e-01 | 96.6% | 92.7% |
| 4061279 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 60.0 | 6.18e-01 | 98.3% | 94.5% |
| 3643885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 64.0 | 6.08e-01 | 100.0% | 87.1% |
| 3607327 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 63.0 | 6.32e-01 | 98.3% | 93.3% |
| 4022876 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 64.0 | 5.78e-01 | 100.0% | 72.5% |
| 3416242 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.72 | 64.0 | 5.52e-01 | 100.0% | 70.0% |
| 3220510 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.72 | 55.0 | 5.84e-01 | 100.0% | 98.0% |
| 5035948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 61.0 | 5.43e-01 | 98.3% | 67.5% |
| 3174958 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 58.0 | 5.91e-01 | 96.6% | 92.7% |
| 5041402 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 58.0 | 5.68e-01 | 98.3% | 83.1% |
| 4142344 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 58.0 | 5.98e-01 | 98.3% | 94.5% |
| 3502282 | 168.1.1.1 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 | 0.71 | 61.0 | 4.29e-01 | 100.0% | 53.4% |
| 3657981 | 198.1.1.16 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 | 0.70 | 62.0 | 5.60e-01 | 100.0% | 80.0% |
| 4566374 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.69 | 58.0 | 5.47e-01 | 100.0% | 96.0% |
| 5057991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 55.0 | 5.24e-01 | 98.3% | 77.1% |
| 3781990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 58.0 | 5.11e-01 | 98.3% | 71.8% |
| 3402232 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.65 | 54.0 | 4.66e-01 | 100.0% | 58.0% |
| 3226384 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.64 | 55.0 | 4.75e-01 | 100.0% | 65.3% |
| 3819834 | 605.6.1.8 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › Mlo | 0.64 | 43.0 | 4.00e-01 | 70.7% | 77.3% |
| 4927142 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.63 | 47.0 | 3.85e-01 | 82.8% | 73.0% |
| 3714293 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 52.0 | 5.12e-01 | 100.0% | 90.8% |
| 5079783 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 51.0 | 3.00e-01 | 100.0% | 21.0% |
| 3704156 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.60 | 51.0 | 3.67e-01 | 100.0% | 93.5% |
| 5048577 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.60 | 49.0 | 4.49e-01 | 96.6% | 88.7% |
| 5069251 | 7602.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C | 0.59 | 50.0 | 3.48e-01 | 100.0% | 42.3% |
| 3590231 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.59 | 50.0 | 4.19e-01 | 98.3% | 89.5% |
| 3938533 | 3873.1.1.0 ↗ | a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain | 0.57 | 47.0 | 3.80e-01 | 100.0% | 53.1% |
| 4624818 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.57 | 46.0 | 4.03e-01 | 91.4% | 78.9% |
| 4946450 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.57 | 46.0 | 4.16e-01 | 100.0% | 95.5% |
| 4036208 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.56 | 46.0 | 2.83e-01 | 96.6% | 18.6% |
| 4945073 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.56 | 45.0 | 4.11e-01 | 100.0% | 88.9% |
| 3602354 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.56 | 46.0 | 3.81e-01 | 100.0% | 67.5% |
| 3590623 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.56 | 47.0 | 3.78e-01 | 96.6% | 76.7% |
| 3793770 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.55 | 38.0 | 3.55e-01 | 72.4% | 60.0% |
| 3406422 | 592.2.1.9 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › PP1_inhibitor | 0.54 | 44.0 | 4.06e-01 | 100.0% | 73.8% |
| 4405015 | 152.1.2.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit | 0.53 | 36.0 | 3.58e-01 | 70.7% | 68.3% |
| 4230264 | 1075.3.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N | 0.53 | 43.0 | 2.77e-01 | 100.0% | 68.1% |
| 2568242 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.52 | 38.0 | 3.77e-01 | 93.1% | 77.0% |