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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00289
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00289
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-69
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.68 | 60.0 | 4.82e-01 | 100.0% | 65.9% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.67 | 58.0 | 4.88e-01 | 100.0% | 63.9% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 52.0 | 4.65e-01 | 85.2% | 96.5% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 49.0 | 4.37e-01 | 82.0% | 100.0% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.65 | 52.0 | 4.15e-01 | 96.7% | 42.1% |
| 3ig5A02 | 3.30.590.50 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.64 | 52.0 | 3.23e-01 | 90.2% | 84.9% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 54.0 | 4.15e-01 | 100.0% | 52.7% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 55.0 | 4.73e-01 | 100.0% | 72.7% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 53.0 | 4.59e-01 | 95.1% | 71.6% |
| 3gidB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.62 | 41.0 | 3.72e-01 | 82.0% | 49.4% |
| 1hkfA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 54.0 | 4.45e-01 | 100.0% | 70.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 50.0 | 3.79e-01 | 100.0% | 95.2% |
| 2o0pA00 | 3.20.170.20 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 | 0.59 | 49.0 | 4.15e-01 | 100.0% | 86.0% |
| 1vkzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 52.0 | 4.03e-01 | 100.0% | 70.1% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.58 | 52.0 | 3.43e-01 | 100.0% | 71.1% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 3.90e-01 | 93.4% | 82.6% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.57 | 39.0 | 2.78e-01 | 100.0% | 25.7% |
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 46.0 | 3.39e-01 | 95.1% | 40.7% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 48.0 | 3.06e-01 | 98.4% | 60.0% |
| 2pvpA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 50.0 | 3.77e-01 | 100.0% | 61.6% |
| 3cwfA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.64e-01 | 86.9% | 94.4% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.55 | 41.0 | 2.95e-01 | 86.9% | 75.3% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.55 | 48.0 | 4.23e-01 | 100.0% | 96.7% |
| 2cpxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 43.0 | 4.02e-01 | 88.5% | 98.7% |
| 2lkzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 43.0 | 3.89e-01 | 88.5% | 100.0% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.54 | 37.0 | 3.99e-01 | 91.8% | 91.8% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.54 | 37.0 | 2.83e-01 | 72.1% | 93.5% |
| 2xy1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.88e-01 | 100.0% | 67.0% |
| 3c0fB00 | 3.30.1490.340 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 42.0 | 3.83e-01 | 91.8% | 95.3% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 45.0 | 3.33e-01 | 100.0% | 61.4% |
| 2qyzA01 | 3.30.1490.160 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains | 0.51 | 38.0 | 4.01e-01 | 80.3% | 96.2% |
| 2g5gX01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 2.87e-01 | 90.2% | 99.0% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.50 | 41.0 | 4.34e-01 | 96.7% | 100.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3760983 | 3335.1.1.3 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C | 0.87 | 68.0 | 5.69e-01 | 83.6% | 99.0% |
| 3698302 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 44.0 | 4.62e-01 | 83.6% | 69.1% |
| 3211717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 37.0 | 4.53e-01 | 78.7% | 88.6% |
| 4378815 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.68 | 59.0 | 5.14e-01 | 100.0% | 70.5% |
| 3933905 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.65 | 55.0 | 4.34e-01 | 100.0% | 43.6% |
| 3914632 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.65 | 55.0 | 4.34e-01 | 100.0% | 46.4% |
| 3557265 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.65 | 55.0 | 4.27e-01 | 100.0% | 44.8% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 45.0 | 3.89e-01 | 88.5% | 80.9% |
| 3461175 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 4.44e-01 | 100.0% | 65.3% |
| 3629954 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.59 | 38.0 | 4.23e-01 | 91.8% | 91.1% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.59 | 50.0 | 3.59e-01 | 100.0% | 86.0% |
| 4277361 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.58 | 48.0 | 3.85e-01 | 100.0% | 60.8% |
| 4554731 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.58 | 45.0 | 3.11e-01 | 88.5% | 43.5% |
| 3543316 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.58 | 40.0 | 2.48e-01 | 75.4% | 20.9% |
| 4085259 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.58 | 49.0 | 3.29e-01 | 100.0% | 79.2% |
| 4384630 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.57 | 42.0 | 3.80e-01 | 100.0% | 58.7% |
| 4956744 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.57 | 48.0 | 3.27e-01 | 100.0% | 79.2% |
| 4959651 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.55 | 43.0 | 3.78e-01 | 98.4% | 57.8% |
| 3695272 | 221.1.1.93 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 | 0.54 | 44.0 | 3.54e-01 | 96.7% | 80.7% |
| 3433661 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.51 | 33.0 | 3.70e-01 | 86.9% | 100.0% |
| 3216812 | 382.1.1.20 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 | 0.51 | 39.0 | 3.60e-01 | 88.5% | 70.6% |
| 3974515 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 42.0 | 2.94e-01 | 98.4% | 67.7% |
| 3685924 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 39.0 | 2.98e-01 | 98.4% | 57.4% |