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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00297
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00297
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 31-144
Domain cluster:
rep: IMGVR_UViG_3300011969_000001-3300011969-Ga0120166_100003830__D1-85_143-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05708.19 best | Peptidase_C92 | 32.6 | 1.10e-07 | 100.0% | 62.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2if6B00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.93 | 83.0 | 6.90e-01 | 100.0% | 58.9% |
| 3kw0A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.79 | 73.0 | 6.10e-01 | 100.0% | 69.8% |
| 1yzbA01 | 3.90.70.40 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 37.0 | 3.67e-01 | 86.0% | 62.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7414 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.93 | 83.0 | 6.87e-01 | 100.0% | 58.2% |
| 3979604 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.89 | 81.0 | 6.71e-01 | 100.0% | 58.4% |
| 3983612 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.89 | 81.0 | 6.77e-01 | 100.0% | 60.0% |
| 3221501 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.82 | 78.0 | 6.36e-01 | 100.0% | 59.5% |
| 3607811 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.80 | 75.0 | 6.10e-01 | 100.0% | 74.5% |
| 3707024 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.79 | 73.0 | 5.83e-01 | 100.0% | 57.1% |
| 379641 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.79 | 73.0 | 6.04e-01 | 100.0% | 68.4% |
| 4025316 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.74 | 68.0 | 5.54e-01 | 100.0% | 63.9% |
| 3273955 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 48.0 | 4.41e-01 | 100.0% | 81.3% |
| 3289468 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 23.0 | 2.85e-01 | 86.0% | 68.6% |
D2
medium
residues 145-214
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzmI00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 35.0 | 2.82e-01 | 100.0% | 34.3% |