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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00401
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00401
Identity
- Kingdom:
- phage
Quality
91.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-58
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.75 | 50.0 | 3.59e-01 | 70.4% | 30.6% |
| 1u2kA01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.67 | 48.0 | 3.33e-01 | 75.9% | 64.6% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.60 | 49.0 | 4.59e-01 | 94.4% | 72.7% |
| 2ifuD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 50.0 | 3.20e-01 | 100.0% | 43.3% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.56 | 36.0 | 3.05e-01 | 87.0% | 39.1% |
| 5fb0C01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 37.0 | 3.66e-01 | 72.2% | 86.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3785388 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.70 | 45.0 | 3.89e-01 | 83.3% | 43.4% |
| 3465422 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.66 | 51.0 | 3.79e-01 | 98.1% | 34.1% |
| 3357520 | 310.2.1.28 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 | 0.62 | 42.0 | 3.59e-01 | 87.0% | 44.7% |
| 3709158 | 4120.1.1.82 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Hikeshi-like_C | 0.60 | 40.0 | 3.93e-01 | 90.7% | 63.3% |
| 3565211 | 3223.1.1.1 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC | 0.59 | 53.0 | 3.02e-01 | 96.3% | 10.6% |
| 3363261 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.53 | 45.0 | 3.31e-01 | 92.6% | 54.8% |