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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00414
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00414
Identity
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-103
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jujA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 39.0 | 4.42e-01 | 93.2% | 67.9% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.73 | 42.0 | 4.62e-01 | 97.3% | 70.0% |
| 1wgnA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 37.0 | 4.04e-01 | 93.2% | 60.3% |
| 1vg5A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 38.0 | 3.87e-01 | 97.3% | 54.8% |
| 2dnaA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 38.0 | 3.97e-01 | 97.3% | 59.7% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 40.0 | 4.49e-01 | 98.6% | 77.6% |
| 1vdlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 38.0 | 3.70e-01 | 98.6% | 53.8% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 45.0 | 5.03e-01 | 98.6% | 96.5% |
| 3ihpB05 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 40.0 | 4.61e-01 | 98.6% | 88.9% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 35.0 | 3.63e-01 | 93.2% | 59.7% |
| 3zh9B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 39.0 | 3.99e-01 | 97.3% | 68.6% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.90e-01 | 79.7% | 63.2% |
| 1kf6D00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 39.0 | 3.40e-01 | 77.0% | 44.5% |
| 5mx4A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 47.0 | 3.46e-01 | 97.3% | 92.3% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.56 | 43.0 | 4.49e-01 | 98.6% | 88.1% |
| 2mgwA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 33.0 | 3.71e-01 | 98.6% | 84.6% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.55 | 41.0 | 3.18e-01 | 83.8% | 65.2% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.54 | 35.0 | 3.29e-01 | 83.8% | 50.0% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 44.0 | 3.15e-01 | 97.3% | 36.3% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.52 | 32.0 | 3.29e-01 | 77.0% | 65.7% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.51 | 35.0 | 3.33e-01 | 94.6% | 60.0% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 36.0 | 3.11e-01 | 78.4% | 92.3% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.50 | 40.0 | 3.37e-01 | 90.5% | 56.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3442566 | 103.1.1.93 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_RAD5A | 0.77 | 43.0 | 4.90e-01 | 98.6% | 74.5% |
| 3657880 | 103.1.1.93 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_RAD5A | 0.73 | 42.0 | 5.12e-01 | 97.3% | 86.0% |
| 3398463 | 103.1.1.142 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Sid-3 | 0.73 | 45.0 | 4.49e-01 | 98.6% | 61.3% |
| 3256610 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 43.0 | 4.91e-01 | 98.6% | 81.8% |
| 3407157 | 103.1.1.27 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 | 0.71 | 39.0 | 4.33e-01 | 97.3% | 66.7% |
| 3698234 | 103.1.1.88 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF27606 | 0.71 | 35.0 | 3.99e-01 | 89.2% | 63.6% |
| 3701061 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.70 | 39.0 | 4.49e-01 | 93.2% | 74.5% |
| 4015460 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.70 | 42.0 | 4.63e-01 | 95.9% | 75.0% |
| 3926165 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 38.0 | 4.79e-01 | 93.2% | 88.9% |
| 3394574 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.70 | 41.0 | 4.68e-01 | 95.9% | 80.0% |
| 3362045 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.69 | 35.0 | 4.27e-01 | 87.8% | 74.0% |
| 3888725 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.69 | 34.0 | 3.78e-01 | 87.8% | 58.3% |
| 3786369 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.69 | 39.0 | 4.43e-01 | 93.2% | 74.5% |
| 3731325 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.67 | 38.0 | 4.30e-01 | 94.6% | 74.5% |
| 3248561 | 103.1.1.93 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_RAD5A | 0.66 | 39.0 | 4.36e-01 | 95.9% | 78.2% |
| 3186616 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 41.0 | 4.39e-01 | 98.6% | 75.4% |
| 3936880 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 39.0 | 4.28e-01 | 95.9% | 76.7% |
| 3839942 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.63 | 45.0 | 2.89e-01 | 77.0% | 56.2% |
| 3240015 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.61 | 40.0 | 4.21e-01 | 97.3% | 75.4% |
| 4937110 | 101.1.2.128 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2582 | 0.57 | 34.0 | 3.43e-01 | 81.1% | 57.3% |
| 3351184 | 103.1.1.87 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_At5g58720 | 0.55 | 34.0 | 4.01e-01 | 98.6% | 100.0% |
| 3248563 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.54 | 32.0 | 3.52e-01 | 75.7% | 73.3% |
| 3314004 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.53 | 35.0 | 3.17e-01 | 78.4% | 47.6% |
| 4206573 | 148.1.3.39 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HolB_lid | 0.53 | 32.0 | 3.60e-01 | 97.3% | 95.6% |
| 4970709 | 2484.1.1.342 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29288 | 0.52 | 40.0 | 3.06e-01 | 81.1% | 78.2% |
| 3837881 | 103.1.1.30 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › GIP1_N | 0.52 | 31.0 | 3.83e-01 | 95.9% | 97.8% |
| 2139067 | 518.1.1.1 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N | 0.52 | 39.0 | 3.96e-01 | 95.9% | 87.1% |
| 3483048 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.52 | 30.0 | 3.05e-01 | 79.7% | 54.7% |
| 3359672 | 3763.1.1.1 ↗ | alpha bundles › protein of unknown function NP_951600.1 helical domain › protein of unknown function NP_951600.1 helical domain › protein of unknown function NP_951600.1 helical domain › PRA1 | 0.52 | 35.0 | 3.59e-01 | 70.3% | 74.3% |