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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00417
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00417
Identity
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 43.0 | 3.74e-01 | 79.4% | 37.4% |
| 3kb9A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.69 | 50.0 | 3.14e-01 | 77.8% | 40.3% |
| 1n00A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.63 | 44.0 | 4.25e-01 | 76.2% | 64.4% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.61 | 43.0 | 4.44e-01 | 76.2% | 78.3% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 49.0 | 3.56e-01 | 95.2% | 88.6% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.10e-01 | 96.8% | 92.6% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.53 | 40.0 | 3.61e-01 | 85.7% | 83.2% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 3.60e-01 | 93.7% | 70.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3438800 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.65 | 51.0 | 4.96e-01 | 84.1% | 90.0% |
| 168906 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.63 | 49.0 | 2.94e-01 | 81.0% | 44.4% |
| 3973765 | 564.1.1.3 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › DUF4880 | 0.62 | 47.0 | 4.84e-01 | 100.0% | 91.7% |
| 4434935 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.61 | 47.0 | 3.75e-01 | 87.3% | 92.1% |
| 5045248 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.61 | 51.0 | 4.54e-01 | 98.4% | 65.9% |