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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00425
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00425
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-137
Domain cluster:
rep: MW805361.1__URC15306.1__GD1_182__00182__D9-59_119-139
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 50.0 | 4.46e-01 | 100.0% | 54.6% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.65 | 45.0 | 4.90e-01 | 92.1% | 90.0% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 48.0 | 4.51e-01 | 94.7% | 64.6% |
| 5abxA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.62 | 44.0 | 3.42e-01 | 94.7% | 33.5% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 44.0 | 3.54e-01 | 96.1% | 36.6% |
| 2ii7H00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.60 | 43.0 | 3.94e-01 | 93.4% | 55.7% |
| 4fixA01 | 3.90.550.60 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.59 | 42.0 | 2.68e-01 | 93.4% | 14.1% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 41.0 | 4.29e-01 | 92.1% | 82.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 46.0 | 4.11e-01 | 92.1% | 59.6% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 44.0 | 4.00e-01 | 94.7% | 61.4% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 42.0 | 3.72e-01 | 100.0% | 53.2% |
| 3zyzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.91e-01 | 90.8% | 55.3% |
| 4iihB04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.22e-01 | 92.1% | 67.3% |
| 2wliA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.56 | 49.0 | 3.89e-01 | 98.7% | 50.9% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.56 | 38.0 | 3.30e-01 | 85.5% | 44.3% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.56 | 45.0 | 3.92e-01 | 96.1% | 56.9% |
| 2x41A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.95e-01 | 90.8% | 60.5% |
| 3up6A01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 3.63e-01 | 93.4% | 56.6% |
| 1a8mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.54e-01 | 93.4% | 44.1% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 3.86e-01 | 96.1% | 59.5% |
| 2vvdA00 | 2.60.120.720 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.58e-01 | 93.4% | 70.4% |
| 4mz2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.08e-01 | 94.7% | 65.8% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.54 | 40.0 | 3.31e-01 | 94.7% | 42.3% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.54 | 45.0 | 3.46e-01 | 96.1% | 90.2% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.53 | 36.0 | 3.40e-01 | 93.4% | 53.9% |
| 6a6yA00 | 2.60.40.1490 | Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like | 0.52 | 41.0 | 3.34e-01 | 94.7% | 43.4% |
| 5hccB03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 3.88e-01 | 97.4% | 61.2% |
| 4uapA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 43.0 | 3.50e-01 | 93.4% | 57.3% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 44.0 | 3.65e-01 | 100.0% | 67.3% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.22e-01 | 98.7% | 67.3% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 43.0 | 4.39e-01 | 96.1% | 97.4% |
| 4mxwD00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.53e-01 | 92.1% | 67.4% |
| 1ajwA00 | 2.70.50.30 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 | 0.51 | 39.0 | 3.28e-01 | 92.1% | 44.8% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.64e-01 | 96.1% | 92.2% |
| 1jhjA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 43.0 | 3.38e-01 | 93.4% | 55.9% |
| 1dg6A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.19e-01 | 92.1% | 43.0% |
| 3e1uA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 42.0 | 3.35e-01 | 100.0% | 83.7% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 42.0 | 3.55e-01 | 98.7% | 98.6% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.19e-01 | 93.4% | 43.8% |
| 2re9A01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 3.07e-01 | 90.8% | 39.5% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.51 | 40.0 | 3.36e-01 | 92.1% | 78.5% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.50 | 38.0 | 3.41e-01 | 96.1% | 54.1% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.50 | 37.0 | 2.96e-01 | 80.3% | 42.7% |
| 2yrbA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 40.0 | 3.42e-01 | 92.1% | 100.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4210460 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.75 | 69.0 | 5.80e-01 | 97.4% | 100.0% |
| 3921426 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.72 | 66.0 | 5.46e-01 | 100.0% | 99.2% |
| 5056966 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.71 | 67.0 | 5.62e-01 | 100.0% | 100.0% |
| 4258905 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.71 | 65.0 | 5.41e-01 | 98.7% | 100.0% |
| 3398994 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.69 | 64.0 | 5.42e-01 | 100.0% | 100.0% |
| 5012930 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 44.0 | 4.23e-01 | 94.7% | 58.8% |
| 4057352 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.66 | 50.0 | 3.51e-01 | 100.0% | 24.7% |
| 4121299 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.63 | 54.0 | 3.82e-01 | 96.1% | 97.1% |
| 1442393 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 47.0 | 4.20e-01 | 93.4% | 57.8% |
| 3408263 | 11.1.1.822 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 | 0.61 | 41.0 | 3.86e-01 | 100.0% | 55.8% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 45.0 | 4.77e-01 | 96.1% | 96.9% |
| 3554445 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.60 | 44.0 | 3.52e-01 | 97.4% | 36.5% |
| 3306922 | 11.1.1.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 | 0.60 | 54.0 | 4.12e-01 | 100.0% | 46.5% |
| 3251650 | 10.2.1.84 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin | 0.59 | 51.0 | 4.07e-01 | 96.1% | 78.7% |
| 3917665 | 11.10.1.11 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › TRAF_BTBD17 | 0.59 | 46.0 | 3.58e-01 | 98.7% | 40.0% |
| 3235737 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 42.0 | 3.78e-01 | 100.0% | 52.7% |
| 4225330 | 303.1.1.2 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › HDC | 0.58 | 49.0 | 3.58e-01 | 98.7% | 74.7% |
| 3176441 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.58 | 51.0 | 3.77e-01 | 98.7% | 55.5% |
| 3799804 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.57 | 49.0 | 3.71e-01 | 100.0% | 49.2% |
| 3268634 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.57 | 51.0 | 4.09e-01 | 100.0% | 50.7% |
| 5014950 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 50.0 | 4.00e-01 | 100.0% | 50.3% |
| 3786610 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.56 | 48.0 | 3.90e-01 | 100.0% | 57.5% |
| 4961996 | 11.1.1.1403 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 | 0.56 | 44.0 | 3.75e-01 | 98.7% | 52.0% |
| 5005662 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 3.89e-01 | 98.7% | 49.7% |
| 4024194 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 47.0 | 3.80e-01 | 100.0% | 48.7% |
| 5035506 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 42.0 | 3.98e-01 | 96.1% | 68.4% |
| 3709396 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 40.0 | 3.19e-01 | 97.4% | 35.0% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.54 | 46.0 | 3.40e-01 | 100.0% | 53.4% |
| 3252287 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.54 | 42.0 | 3.67e-01 | 94.7% | 54.4% |
| 3406794 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.53 | 44.0 | 3.61e-01 | 96.1% | 63.9% |
| 3238841 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.83e-01 | 97.4% | 58.5% |
| 5025698 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 37.0 | 3.40e-01 | 93.4% | 53.3% |
| 3927415 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.98e-01 | 96.1% | 68.3% |
| 4277768 | 223.2.1.52 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › GAP1-N2 | 0.53 | 38.0 | 3.18e-01 | 81.6% | 40.7% |
| 4011908 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.53 | 44.0 | 3.43e-01 | 97.4% | 52.4% |
| 4946109 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.53 | 41.0 | 3.60e-01 | 93.4% | 53.5% |
| 3879937 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.51e-01 | 97.4% | 58.1% |
| 5000329 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.84e-01 | 93.4% | 71.4% |
| 3740477 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.52e-01 | 98.7% | 65.0% |
| 3446515 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 42.0 | 3.45e-01 | 97.4% | 47.1% |
| 4032883 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.51 | 43.0 | 3.86e-01 | 93.4% | 71.4% |
| 3413446 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.50 | 41.0 | 3.37e-01 | 97.4% | 64.4% |