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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00438
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00438
Identity
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 18-156_188-210
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11927.15 best | HODM_asu-like | 46.1 | 5.80e-12 | 53.1% | 23.8% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fg8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.67 | 43.0 | 5.21e-01 | 95.1% | 98.1% |
| 3lifA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.66 | 37.0 | 4.94e-01 | 78.4% | 100.0% |
| 1f98A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 47.0 | 5.32e-01 | 94.4% | 96.0% |
| 3mxqC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 43.0 | 4.82e-01 | 91.4% | 90.4% |
| 1ztuA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 42.0 | 4.39e-01 | 72.2% | 76.8% |
| 2dkhA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.59 | 26.0 | 3.13e-01 | 99.4% | 58.8% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 34.0 | 4.40e-01 | 93.8% | 100.0% |
| 3omzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 28.0 | 3.48e-01 | 81.5% | 71.6% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 46.0 | 4.87e-01 | 96.3% | 95.1% |
| 1ysqA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 42.0 | 4.07e-01 | 77.2% | 84.5% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 4.54e-01 | 95.7% | 96.1% |
| 4u3tB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 40.0 | 3.26e-01 | 78.4% | 89.5% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 29.0 | 3.08e-01 | 88.9% | 58.5% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 3.03e-01 | 77.2% | 95.0% |
| 3by9B01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 39.0 | 4.28e-01 | 96.3% | 96.2% |
| 3rjuA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.98e-01 | 77.2% | 94.0% |
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.50 | 32.0 | 3.89e-01 | 100.0% | 96.3% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 25.0 | 3.10e-01 | 100.0% | 75.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4017003 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.91 | 88.0 | 6.71e-01 | 100.0% | 67.4% |
| 3684754 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.91 | 87.0 | 6.49e-01 | 100.0% | 70.6% |
| 3186255 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.91 | 85.0 | 6.59e-01 | 98.1% | 79.4% |
| 3639147 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.90 | 87.0 | 6.81e-01 | 100.0% | 78.4% |
| 3729765 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.90 | 87.0 | 6.68e-01 | 100.0% | 74.7% |
| 3783751 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.90 | 86.0 | 6.59e-01 | 100.0% | 80.9% |
| 1921567 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.90 | 86.0 | 6.56e-01 | 100.0% | 74.3% |
| 3786588 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.90 | 86.0 | 6.60e-01 | 100.0% | 77.2% |
| 4028834 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.71 | 33.0 | 3.86e-01 | 88.9% | 60.0% |
| 4998374 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 34.0 | 3.86e-01 | 88.9% | 60.0% |
| 3927616 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.69 | 39.0 | 4.93e-01 | 95.7% | 92.6% |
| 3969877 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 40.0 | 5.22e-01 | 74.1% | 100.0% |
| 3704750 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 38.0 | 4.99e-01 | 84.0% | 100.0% |
| 3064449 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.67 | 45.0 | 5.34e-01 | 71.0% | 100.0% |
| 4960622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 33.0 | 4.22e-01 | 78.4% | 80.0% |
| 5077954 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 33.0 | 3.73e-01 | 91.4% | 61.5% |
| 4977897 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 34.0 | 3.68e-01 | 88.9% | 59.3% |
| 3432113 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.64 | 31.0 | 3.57e-01 | 88.9% | 60.8% |
| 5033617 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 39.0 | 4.35e-01 | 76.5% | 78.4% |
| 3983387 | 223.1.1.57 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif | 0.63 | 36.0 | 3.73e-01 | 79.0% | 59.4% |
| 4999190 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 32.0 | 3.56e-01 | 88.9% | 60.0% |
| 4495621 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.62 | 31.0 | 3.37e-01 | 100.0% | 55.6% |
| 3691605 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.61 | 30.0 | 3.37e-01 | 100.0% | 58.5% |
| 3592234 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 39.0 | 4.63e-01 | 75.9% | 95.5% |
| 3698579 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.60 | 38.0 | 4.58e-01 | 75.3% | 94.5% |
| 4927093 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 39.0 | 4.37e-01 | 75.9% | 83.6% |
| 4042767 | 223.1.1.103 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 | 0.59 | 39.0 | 4.22e-01 | 96.9% | 77.8% |
| 4948242 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 38.0 | 3.96e-01 | 75.9% | 70.0% |
| 3191396 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.55 | 31.0 | 3.38e-01 | 88.9% | 64.3% |
| 5035567 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.55 | 25.0 | 3.71e-01 | 91.4% | 100.0% |
| 2716407 | 4255.1.1.2 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › V-set | 0.55 | 26.0 | 3.55e-01 | 81.5% | 87.1% |
| 3615545 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.54 | 29.0 | 3.56e-01 | 93.2% | 81.0% |
| 3782262 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.53 | 36.0 | 4.10e-01 | 79.6% | 95.7% |
| 3741369 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.53 | 32.0 | 3.95e-01 | 77.2% | 100.0% |
| 3790672 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.53 | 31.0 | 3.30e-01 | 90.1% | 63.9% |
| 3280230 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.51 | 38.0 | 3.05e-01 | 77.8% | 93.8% |
| 3579823 | 331.18.1.5 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › PTHB1_pf | 0.50 | 29.0 | 3.55e-01 | 88.3% | 91.0% |
D2
medium
residues 157-187_211-250
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fpzC00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 42.0 | 3.20e-01 | 100.0% | 31.5% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 45.0 | 4.32e-01 | 100.0% | 81.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3237109 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 34.0 | 4.21e-01 | 94.4% | 97.5% |
| 4937419 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.54 | 35.0 | 3.76e-01 | 94.4% | 83.6% |