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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00457
Bact-VirSR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00457
Identity
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-74
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.71 | 36.0 | 3.76e-01 | 100.0% | 51.7% |
| 1z01A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 36.0 | 3.65e-01 | 100.0% | 49.2% |
| 1auuA00 | 2.30.24.10 | Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain | 0.69 | 50.0 | 5.22e-01 | 100.0% | 87.3% |
| 1cukA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 56.0 | 5.44e-01 | 98.4% | 83.3% |
| 1bvsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 54.0 | 5.28e-01 | 98.4% | 83.1% |
| 2q5iA03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.66 | 58.0 | 4.66e-01 | 100.0% | 99.2% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.65 | 53.0 | 3.58e-01 | 100.0% | 24.3% |
| 5ex2A01 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.64 | 52.0 | 3.47e-01 | 90.2% | 71.4% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.64 | 37.0 | 3.02e-01 | 100.0% | 30.4% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.63 | 54.0 | 3.63e-01 | 95.1% | 27.0% |
| 5cxmA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.62 | 52.0 | 4.54e-01 | 98.4% | 77.8% |
| 2o34A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.61 | 51.0 | 3.39e-01 | 93.4% | 97.6% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 41.0 | 3.27e-01 | 72.1% | 73.0% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.60 | 43.0 | 3.96e-01 | 98.4% | 58.7% |
| 3nemA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 53.0 | 4.38e-01 | 98.4% | 65.7% |
| 1nnxA00 | 2.40.50.200 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold | 0.59 | 48.0 | 4.24e-01 | 100.0% | 60.2% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 38.0 | 2.74e-01 | 100.0% | 23.8% |
| 2e5yA01 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.57 | 50.0 | 4.45e-01 | 100.0% | 76.1% |
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 37.0 | 3.21e-01 | 95.1% | 39.8% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.56 | 47.0 | 4.18e-01 | 100.0% | 89.2% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 44.0 | 3.51e-01 | 90.2% | 94.7% |
| 3bkpA00 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.54 | 40.0 | 3.07e-01 | 86.9% | 69.3% |
| 4fuqC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 36.0 | 2.26e-01 | 72.1% | 56.5% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.53 | 38.0 | 2.75e-01 | 86.9% | 25.4% |
| 5c3vA01 | 3.30.800.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta | 0.52 | 42.0 | 3.15e-01 | 91.8% | 82.6% |
| 2fm8B00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 42.0 | 3.37e-01 | 90.2% | 92.8% |
| 7k0aA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 36.0 | 2.64e-01 | 75.4% | 59.0% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 2.77e-01 | 80.3% | 32.8% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.51 | 39.0 | 3.53e-01 | 88.5% | 86.5% |
| 1lwjA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 38.0 | 4.13e-01 | 100.0% | 100.0% |
| 4qxaB00 | 2.30.29.230 | Mainly Beta › Roll › PH-domain like › | 0.50 | 45.0 | 3.38e-01 | 100.0% | 45.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4337382 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.69 | 57.0 | 5.31e-01 | 98.4% | 73.3% |
| 4128954 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.66 | 59.0 | 5.65e-01 | 98.4% | 85.7% |
| 5066724 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 57.0 | 4.75e-01 | 98.4% | 65.7% |
| 3483861 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.63 | 38.0 | 3.53e-01 | 100.0% | 46.3% |
| 3598925 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.61 | 53.0 | 4.22e-01 | 100.0% | 83.8% |
| 4943433 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.60 | 53.0 | 4.67e-01 | 100.0% | 91.1% |
| 4935362 | 205.1.1.22 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 | 0.60 | 53.0 | 3.30e-01 | 100.0% | 26.5% |
| 3704298 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.59 | 51.0 | 4.23e-01 | 100.0% | 82.6% |
| 4928221 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.59 | 51.0 | 4.10e-01 | 98.4% | 48.4% |
| 4225660 | 4337.1.1.1 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C | 0.59 | 50.0 | 4.20e-01 | 100.0% | 88.7% |
| 4436308 | 4337.1.1.1 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C | 0.59 | 50.0 | 4.39e-01 | 98.4% | 92.6% |
| 4304159 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.59 | 50.0 | 4.35e-01 | 98.4% | 97.0% |
| 4103720 | 4337.1.1.1 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C | 0.59 | 50.0 | 4.24e-01 | 98.4% | 90.8% |
| 4666109 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.59 | 47.0 | 3.63e-01 | 91.8% | 76.7% |
| 4969344 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.58 | 49.0 | 4.25e-01 | 100.0% | 86.7% |
| 3995726 | 5.1.4.413 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML, Beta-prop_EML_2 | 0.58 | 45.0 | 2.62e-01 | 86.9% | 58.9% |
| 4474942 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.58 | 49.0 | 4.68e-01 | 100.0% | 90.7% |
| 3878645 | 5.1.4.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 | 0.58 | 42.0 | 2.66e-01 | 78.7% | 84.1% |
| 4196623 | 4337.1.1.1 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C | 0.58 | 49.0 | 4.09e-01 | 100.0% | 86.8% |
| 3944566 | 809.1.1.10 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › EndoU_bacteria | 0.57 | 39.0 | 3.99e-01 | 100.0% | 71.7% |
| 4991507 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 43.0 | 2.80e-01 | 85.2% | 22.5% |
| 4397081 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.57 | 48.0 | 4.38e-01 | 100.0% | 90.9% |
| 5006841 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.56 | 46.0 | 3.61e-01 | 91.8% | 73.1% |
| 4656873 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.56 | 47.0 | 3.86e-01 | 100.0% | 87.1% |
| 4122616 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.55 | 45.0 | 4.04e-01 | 98.4% | 89.5% |
| 3409868 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 42.0 | 2.68e-01 | 82.0% | 69.4% |
| 3250134 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 39.0 | 3.10e-01 | 100.0% | 37.5% |
| 4236119 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.55 | 46.0 | 4.11e-01 | 100.0% | 94.6% |
| 4195270 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.54 | 46.0 | 3.98e-01 | 98.4% | 87.0% |
| 3834262 | 223.2.1.15 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin | 0.54 | 43.0 | 3.40e-01 | 91.8% | 55.0% |
| 4274382 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.53 | 45.0 | 4.01e-01 | 100.0% | 89.4% |
| 5000991 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.53 | 43.0 | 3.40e-01 | 90.2% | 87.7% |
| 6632 | 241.1.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Invas_SpaK | 0.53 | 43.0 | 3.37e-01 | 90.2% | 94.0% |
| 4510383 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.53 | 46.0 | 3.95e-01 | 100.0% | 86.0% |
| 3344083 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.53 | 40.0 | 2.70e-01 | 82.0% | 56.8% |
| 3743129 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.51 | 41.0 | 3.50e-01 | 91.8% | 66.7% |
| 4413956 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.51 | 44.0 | 3.41e-01 | 100.0% | 48.3% |
| 5073591 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.50 | 41.0 | 3.30e-01 | 95.1% | 87.7% |
| 4959353 | 2498.1.1.58 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2201_N | 0.50 | 42.0 | 3.09e-01 | 98.4% | 40.0% |