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SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00502

Bact-Vir

SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00502

Identity

Kingdom:
phage

Quality

60.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 56-136
PDB
D2 medium residues 137-279
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odlA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.84 79.0 5.67e-01 100.0% 61.3%
4i84A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.83 79.0 6.06e-01 100.0% 70.6%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.83 79.0 4.91e-01 100.0% 26.2%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.79 74.0 4.88e-01 100.0% 37.7%
3zscA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 74.0 5.55e-01 100.0% 83.3%
1dbgA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 74.0 5.01e-01 100.0% 47.4%
1ee6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 71.0 6.30e-01 95.8% 86.8%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 73.0 6.07e-01 98.6% 100.0%
1gq8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 72.0 5.53e-01 100.0% 66.7%
4oj5C04 2.160.20.130 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 71.0 6.45e-01 98.6% 98.9%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 67.0 4.52e-01 92.3% 27.4%
2xt2B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.76 70.0 6.32e-01 100.0% 79.4%
3ljyA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.76 70.0 5.83e-01 100.0% 60.3%
3p4gD00 2.160.20.160 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.75 69.0 5.33e-01 100.0% 53.2%
3lycA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.75 69.0 5.78e-01 100.0% 59.3%
3jx8A00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 67.0 5.60e-01 100.0% 80.6%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 68.0 5.77e-01 100.0% 92.0%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 68.0 5.84e-01 100.0% 87.6%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.72 64.0 5.72e-01 93.7% 97.4%
8tmsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 62.0 4.97e-01 93.7% 85.7%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.69 46.0 5.43e-01 100.0% 100.0%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.67 59.0 5.73e-01 97.9% 86.1%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 59.0 5.73e-01 97.2% 89.2%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 58.0 5.62e-01 96.5% 87.9%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 45.0 4.80e-01 90.2% 97.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4020264 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.92 66.0 7.71e-01 81.8% 100.0%
4935712 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.91 64.0 6.42e-01 78.3% 71.0%
5020282 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.90 59.0 7.26e-01 72.7% 100.0%
3606189 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.90 79.0 5.90e-01 100.0% 40.9%
3529560 207.2.1.45 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Daz 0.90 86.0 6.31e-01 100.0% 52.4%
4307386 207.6.1.16 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP 0.90 71.0 6.42e-01 100.0% 63.2%
3800711 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.88 77.0 7.61e-01 100.0% 88.0%
4935713 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.86 60.0 6.72e-01 70.6% 100.0%
5040588 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.86 65.0 7.00e-01 100.0% 88.8%
4932011 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.86 63.0 6.97e-01 95.1% 92.2%
4026564 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.86 76.0 6.73e-01 100.0% 67.7%
5032703 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.86 66.0 7.39e-01 99.3% 99.1%
4025775 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.86 67.0 7.37e-01 90.2% 100.0%
4932010 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.85 67.0 6.89e-01 99.3% 85.2%
5002393 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.84 67.0 7.30e-01 99.3% 97.5%
5040589 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.83 67.0 7.21e-01 88.1% 95.2%
4009140 207.2.1.90 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA, AC_1 0.81 77.0 4.83e-01 100.0% 24.9%
3244547 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.79 69.0 5.60e-01 100.0% 51.2%
3711105 208.7.1.6 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG 0.78 56.0 5.50e-01 99.3% 69.3%
3787858 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.77 63.0 6.20e-01 100.0% 82.0%
1141999 207.2.1.25 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA 0.77 67.0 4.52e-01 92.3% 27.4%
3744798 208.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DUF1720 0.77 60.0 5.98e-01 100.0% 78.7%
4981608 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.77 73.0 6.77e-01 100.0% 85.7%
4028145 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.76 69.0 6.78e-01 97.2% 91.6%
4643528 208.2.1.11 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Ice_nucleation 0.76 55.0 6.20e-01 93.7% 98.2%
3797425 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.73 67.0 4.58e-01 100.0% 29.6%
3908225 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 66.0 5.85e-01 100.0% 91.2%
3605595 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.71 49.0 4.51e-01 99.3% 55.6%
3926145 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.70 64.0 5.78e-01 100.0% 74.4%
3832705 207.8.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N 0.70 65.0 4.54e-01 100.0% 50.7%
3528957 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.69 64.0 5.65e-01 100.0% 70.7%
4946338 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.69 63.0 4.91e-01 100.0% 72.9%
4963654 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.68 62.0 4.49e-01 100.0% 53.2%
3703307 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.67 62.0 5.26e-01 100.0% 75.7%
D3 medium residues 280-469
PDB
D4 medium residues 470-530
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5olpA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 60.0 3.68e-01 100.0% 27.3%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.68 59.0 4.43e-01 100.0% 39.2%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 58.0 4.64e-01 100.0% 50.0%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 57.0 4.82e-01 100.0% 70.8%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 56.0 4.23e-01 100.0% 39.5%
1vq8O00 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.61 52.0 4.27e-01 98.4% 59.1%
4g1vA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.60 43.0 3.43e-01 78.7% 87.5%
1gvhA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.57 43.0 3.35e-01 82.0% 96.5%
1ep3B02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.55 42.0 3.49e-01 85.2% 60.7%
2fwmX00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 46.0 3.28e-01 100.0% 89.6%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 3.13e-01 77.0% 48.4%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.22e-01 93.4% 51.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4020264 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.90 78.0 6.37e-01 100.0% 54.3%
4971789 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.88 71.0 5.44e-01 100.0% 40.8%
5040589 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.87 75.0 5.81e-01 100.0% 45.6%
5039608 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.87 73.0 6.98e-01 100.0% 80.0%
4028157 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.83 71.0 5.44e-01 100.0% 42.2%
5041137 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.83 68.0 6.51e-01 96.7% 77.1%
5033306 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.83 71.0 5.42e-01 100.0% 42.2%
3945380 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.83 68.0 5.70e-01 98.4% 54.0%
4378528 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.81 65.0 5.47e-01 100.0% 53.0%
4026564 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.80 68.0 4.73e-01 100.0% 29.7%
5037365 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.80 64.0 4.32e-01 100.0% 24.0%
4929387 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.79 64.0 6.20e-01 100.0% 78.6%
3517885 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.77 68.0 4.85e-01 100.0% 33.9%
4818375 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.75 63.0 5.15e-01 100.0% 76.4%
3165270 207.2.1.10 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.74 65.0 4.24e-01 100.0% 24.2%
3217776 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.73 61.0 4.28e-01 100.0% 29.2%
4940774 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.73 61.0 5.09e-01 100.0% 54.3%
3391275 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.69 52.0 4.45e-01 100.0% 48.6%
3890348 208.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.67 47.0 4.11e-01 98.4% 47.0%
3187916 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.64 55.0 3.83e-01 100.0% 30.9%
3684090 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 51.0 4.92e-01 100.0% 80.0%
1380294 207.6.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind 0.61 51.0 4.18e-01 100.0% 63.2%
3769689 207.14.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DUF5585 0.57 49.0 4.61e-01 100.0% 81.3%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.55 41.0 3.92e-01 86.9% 100.0%
D5 medium residues 531-689
PDB
D6 medium residues 710-859
PDB
D7 medium residues 860-1018
PDB
D8 medium residues 1019-1169
PDB
D9 medium residues 1329-1452
PDB