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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00005
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00005
Identity
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-109
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6rjiA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 44.0 | 5.66e-01 | 91.2% | 100.0% |
| 8c0zE01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 33.0 | 2.88e-01 | 70.3% | 31.3% |
| 4tquS02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.69 | 47.0 | 5.37e-01 | 97.8% | 100.0% |
| 2wg5F02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 43.0 | 5.13e-01 | 91.2% | 100.0% |
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 45.0 | 4.29e-01 | 71.4% | 84.6% |
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 46.0 | 5.01e-01 | 93.4% | 91.9% |
| 2wfwB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 43.0 | 4.89e-01 | 72.5% | 95.5% |
| 4rg1A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 40.0 | 4.59e-01 | 90.1% | 95.4% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 41.0 | 3.60e-01 | 70.3% | 60.7% |
| 3nppA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.59 | 45.0 | 4.59e-01 | 87.9% | 85.1% |
| 2k5qA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.57 | 46.0 | 4.44e-01 | 87.9% | 78.1% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 35.0 | 3.60e-01 | 100.0% | 64.4% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 42.0 | 4.60e-01 | 90.1% | 100.0% |
| 7x36A01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 42.0 | 2.98e-01 | 89.0% | 56.6% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 42.0 | 4.18e-01 | 91.2% | 82.1% |
| 1quqB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.80e-01 | 86.8% | 65.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4072958 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.78 | 51.0 | 5.92e-01 | 70.3% | 92.3% |
| 4966737 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.78 | 48.0 | 5.78e-01 | 70.3% | 93.3% |
| 3367301 | 2.1.1.48 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C | 0.77 | 45.0 | 5.69e-01 | 92.3% | 100.0% |
| 3599142 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 47.0 | 5.66e-01 | 70.3% | 93.3% |
| 1949626 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.76 | 46.0 | 5.59e-01 | 70.3% | 93.2% |
| 4933970 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.75 | 48.0 | 5.85e-01 | 70.3% | 100.0% |
| 5022847 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.75 | 51.0 | 5.61e-01 | 70.3% | 94.7% |
| 4949453 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.73 | 47.0 | 5.52e-01 | 70.3% | 92.3% |
| 2552766 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.71 | 32.0 | 2.69e-01 | 71.4% | 25.2% |
| 4015388 | 2.1.1.230 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26639 | 0.69 | 51.0 | 4.86e-01 | 100.0% | 66.0% |
| 4369338 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.69 | 45.0 | 5.02e-01 | 91.2% | 85.7% |
| 1833392 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.69 | 32.0 | 2.62e-01 | 89.0% | 25.0% |
| 3336204 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.67 | 44.0 | 4.00e-01 | 72.5% | 50.8% |
| 3520270 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.64 | 40.0 | 3.82e-01 | 97.8% | 53.3% |
| 3641913 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.64 | 48.0 | 5.24e-01 | 87.9% | 96.0% |
| 5011922 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 45.0 | 4.94e-01 | 91.2% | 92.0% |
| 4928594 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.62 | 54.0 | 4.34e-01 | 92.3% | 51.5% |
| 3677082 | 2.1.1.43 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 | 0.61 | 46.0 | 4.49e-01 | 86.8% | 73.0% |
| 5077487 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.61 | 50.0 | 4.33e-01 | 90.1% | 98.6% |
| 4677730 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.59 | 39.0 | 4.51e-01 | 93.4% | 96.9% |
| 5060637 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.59 | 40.0 | 3.58e-01 | 70.3% | 50.4% |
| 4060909 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.59 | 46.0 | 4.07e-01 | 85.7% | 97.1% |
| 3618949 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 45.0 | 4.62e-01 | 89.0% | 84.4% |
| 5037614 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 44.0 | 4.50e-01 | 86.8% | 85.6% |
| 4512935 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.57 | 49.0 | 4.41e-01 | 96.7% | 96.9% |
| 4420993 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 50.0 | 4.65e-01 | 100.0% | 80.9% |
| 1391704 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 33.0 | 2.92e-01 | 76.9% | 42.1% |
| 3252939 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.54 | 37.0 | 4.20e-01 | 87.9% | 98.5% |
| 3498011 | 2.1.1.116 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 | 0.53 | 41.0 | 3.96e-01 | 85.7% | 80.0% |
| 4459871 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 33.0 | 3.59e-01 | 93.4% | 78.7% |