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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00066
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00066
Identity
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-87
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.61 | 39.0 | 3.49e-01 | 92.4% | 44.3% |
| 2du7A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.45e-01 | 88.6% | 57.9% |
| 2du7B03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.21e-01 | 88.6% | 43.0% |
| 2w5nA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.58 | 38.0 | 2.48e-01 | 70.9% | 14.2% |
| 1k5dB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 51.0 | 4.23e-01 | 100.0% | 63.0% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.57 | 39.0 | 3.18e-01 | 72.2% | 82.8% |
| 7yh2B01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.54 | 44.0 | 3.65e-01 | 91.1% | 84.0% |
| 2g7uC02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 37.0 | 2.90e-01 | 70.9% | 92.1% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.75e-01 | 83.5% | 93.1% |
| 3lyxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 43.0 | 3.81e-01 | 92.4% | 70.8% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 43.0 | 3.79e-01 | 92.4% | 71.4% |
| 4jgpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 37.0 | 3.55e-01 | 79.7% | 70.7% |
| 2z6cA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.71e-01 | 92.4% | 72.7% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.28e-01 | 92.4% | 50.0% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 44.0 | 4.23e-01 | 98.7% | 100.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3389027 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 55.0 | 4.61e-01 | 100.0% | 74.3% |
| 4297645 | 5043.1.1.19 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › CusS | 0.60 | 41.0 | 3.23e-01 | 72.2% | 61.1% |
| 3231860 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 53.0 | 4.57e-01 | 100.0% | 70.0% |
| 3193923 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 41.0 | 2.59e-01 | 74.7% | 14.1% |
| 3673362 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.57 | 50.0 | 4.04e-01 | 100.0% | 65.6% |
| 3992448 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.55 | 44.0 | 3.83e-01 | 93.7% | 91.8% |
| None | — | 0.54 | 44.0 | 2.97e-01 | 91.1% | 69.8% | |
| 4000068 | 382.1.1.23 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29371 | 0.54 | 45.0 | 3.98e-01 | 100.0% | 91.5% |
| 5014205 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.53 | 42.0 | 3.32e-01 | 86.1% | 77.0% |
| 3273518 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 40.0 | 3.42e-01 | 100.0% | 50.4% |
| 4951932 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 40.0 | 2.77e-01 | 84.8% | 29.7% |
| 3580851 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 44.0 | 3.39e-01 | 98.7% | 49.0% |
| 5052457 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 43.0 | 3.82e-01 | 92.4% | 75.7% |
| 4647063 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.51 | 38.0 | 2.80e-01 | 81.0% | 31.5% |
| 5018027 | 223.1.1.54 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 | 0.51 | 36.0 | 2.63e-01 | 74.7% | 90.2% |
| 1761866 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.51 | 42.0 | 3.75e-01 | 92.4% | 77.2% |
| 4950605 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 42.0 | 3.64e-01 | 92.4% | 64.0% |
| 4973550 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 41.0 | 3.68e-01 | 92.4% | 70.8% |
| 3403220 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.50 | 39.0 | 3.28e-01 | 87.3% | 81.3% |