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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00112
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00112
Identity
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-17_22-27_55-157
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 36.0 | 3.95e-01 | 91.1% | 76.2% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 4.23e-01 | 93.5% | 76.7% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 27.0 | 3.48e-01 | 88.6% | 80.6% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 30.0 | 3.66e-01 | 74.8% | 85.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018158 | 101.1.2.886 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF790 | 0.71 | 43.0 | 4.60e-01 | 91.1% | 68.2% |
| 4946706 | 101.1.2.886 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF790 | 0.68 | 42.0 | 5.14e-01 | 90.2% | 96.2% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 39.0 | 4.37e-01 | 82.1% | 82.1% |
| 5071263 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 38.0 | 4.27e-01 | 82.9% | 87.8% |
| 5011846 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 33.0 | 4.00e-01 | 82.1% | 97.1% |
| 5056451 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 35.0 | 4.04e-01 | 82.9% | 86.5% |
| 5021360 | 101.1.2.896 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2551 | 0.56 | 36.0 | 4.06e-01 | 91.1% | 88.8% |
| 5055754 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 36.0 | 3.91e-01 | 91.9% | 76.2% |
| 5037085 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 33.0 | 3.75e-01 | 97.6% | 82.2% |
D2
high
residues 169-245
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.64 | 37.0 | 4.25e-01 | 85.7% | 81.1% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 33.0 | 3.44e-01 | 84.4% | 52.1% |
| 3pufL00 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 39.0 | 3.38e-01 | 90.9% | 45.7% |
| 3kioC01 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 39.0 | 3.67e-01 | 90.9% | 59.1% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.53 | 29.0 | 2.78e-01 | 83.1% | 41.8% |
| 3pesA00 | 3.30.300.260 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 34.0 | 3.39e-01 | 90.9% | 63.9% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 31.0 | 2.28e-01 | 71.4% | 20.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052777 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 35.0 | 3.66e-01 | 93.5% | 60.0% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.58 | 34.0 | 4.18e-01 | 96.1% | 100.0% |
| 3782688 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.56 | 43.0 | 3.26e-01 | 96.1% | 35.4% |
| 3497279 | 59.1.4.0 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 | 0.55 | 39.0 | 3.06e-01 | 90.9% | 36.8% |
| 3936775 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.54 | 39.0 | 3.02e-01 | 93.5% | 34.7% |
| 4022943 | 59.1.4.0 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 | 0.53 | 42.0 | 3.23e-01 | 98.7% | 38.2% |
| 3270269 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.53 | 38.0 | 2.97e-01 | 92.2% | 35.2% |
| 3574934 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.53 | 40.0 | 3.38e-01 | 90.9% | 49.6% |
| 5033648 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 28.0 | 3.33e-01 | 81.8% | 78.0% |
| 3245878 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.52 | 36.0 | 2.71e-01 | 87.0% | 30.6% |
| 3056898 | 59.1.1.6 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIIC_sub6 | 0.52 | 40.0 | 3.70e-01 | 100.0% | 63.7% |
| 4298363 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.52 | 38.0 | 2.86e-01 | 96.1% | 32.4% |
| 4799109 | 5.1.3.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase | 0.52 | 38.0 | 3.23e-01 | 80.5% | 95.7% |
| 3419120 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.51 | 36.0 | 2.87e-01 | 89.6% | 36.8% |
| 3883359 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.51 | 39.0 | 3.35e-01 | 90.9% | 51.2% |
| 3276111 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.50 | 38.0 | 3.68e-01 | 97.4% | 70.8% |
| 1878466 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.50 | 37.0 | 3.49e-01 | 98.7% | 63.5% |