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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00124
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00124
Identity
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-57
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.68 | 41.0 | 4.49e-01 | 72.0% | 78.9% |
| 2pm9A02 | 2.20.25.400 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 37.0 | 4.45e-01 | 72.0% | 90.0% |
| 5bpdA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.67 | 57.0 | 4.19e-01 | 100.0% | 35.0% |
| 1yreC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 46.0 | 3.14e-01 | 78.0% | 58.8% |
| 2epgB00 | 3.90.1860.10 | Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB | 0.62 | 54.0 | 3.13e-01 | 100.0% | 49.9% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.59 | 40.0 | 3.48e-01 | 70.0% | 45.5% |
| 2v5gA00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.58 | 46.0 | 3.59e-01 | 90.0% | 37.5% |
| 1a62A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 43.0 | 3.86e-01 | 84.0% | 60.0% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 47.0 | 3.94e-01 | 98.0% | 82.2% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 40.0 | 2.71e-01 | 80.0% | 20.1% |
| 3getA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 42.0 | 3.47e-01 | 86.0% | 84.0% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.54 | 38.0 | 2.51e-01 | 76.0% | 37.7% |
| 1j0wB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 3.74e-01 | 100.0% | 50.5% |
| 1xr0B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 40.0 | 3.53e-01 | 98.0% | 50.5% |
| 7z6eA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.36e-01 | 96.0% | 67.2% |
| 6g1nD01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 40.0 | 3.46e-01 | 90.0% | 89.2% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.51 | 36.0 | 2.82e-01 | 80.0% | 89.1% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 41.0 | 2.99e-01 | 92.0% | 32.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928710 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.73 | 64.0 | 4.64e-01 | 100.0% | 35.7% |
| 4092879 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.71 | 44.0 | 2.56e-01 | 100.0% | 7.6% |
| 4965719 | 300.1.1.26 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF7436 | 0.68 | 59.0 | 4.15e-01 | 100.0% | 31.2% |
| 3236508 | 3105.1.1.4 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 | 0.67 | 50.0 | 3.47e-01 | 84.0% | 28.9% |
| 4960057 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.65 | 55.0 | 4.06e-01 | 100.0% | 35.0% |
| 4976955 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.63 | 54.0 | 3.47e-01 | 100.0% | 20.0% |
| 3345935 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.61 | 52.0 | 3.96e-01 | 96.0% | 67.5% |
| 3744139 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 52.0 | 3.19e-01 | 96.0% | 30.0% |
| 3632875 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.60 | 50.0 | 2.82e-01 | 96.0% | 29.4% |
| 3991790 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 3.81e-01 | 98.0% | 44.8% |
| 4984268 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.58 | 48.0 | 3.88e-01 | 96.0% | 71.0% |
| 3252797 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 45.0 | 3.60e-01 | 90.0% | 50.9% |
| 3476015 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.56 | 49.0 | 4.01e-01 | 100.0% | 55.8% |
| 3926984 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 46.0 | 3.21e-01 | 100.0% | 54.0% |
| 3389668 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.56 | 49.0 | 3.93e-01 | 100.0% | 53.0% |
| None | — | 0.56 | 43.0 | 3.68e-01 | 100.0% | 53.3% | |
| 3909375 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 45.0 | 3.46e-01 | 100.0% | 55.6% |
| 3487656 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.77e-01 | 98.0% | 53.7% |
| 3532957 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 44.0 | 3.38e-01 | 100.0% | 39.3% |
| 3251163 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.55 | 44.0 | 3.60e-01 | 100.0% | 48.9% |
| 3598106 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 46.0 | 3.61e-01 | 100.0% | 70.4% |
| 3579987 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.54 | 48.0 | 3.72e-01 | 100.0% | 48.2% |
| 4027489 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 46.0 | 2.72e-01 | 100.0% | 46.4% |
| 4014809 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.54 | 41.0 | 3.90e-01 | 94.0% | 76.9% |
| 5059723 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.53 | 44.0 | 4.08e-01 | 92.0% | 93.8% |
| 3197713 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 42.0 | 2.60e-01 | 90.0% | 46.6% |
| 5054792 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.53 | 46.0 | 3.89e-01 | 100.0% | 82.4% |
| 3202870 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.53 | 41.0 | 3.25e-01 | 92.0% | 59.2% |
| 3293481 | 861.1.1.1 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi | 0.52 | 45.0 | 3.42e-01 | 100.0% | 82.4% |
| 4979387 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.52 | 38.0 | 3.32e-01 | 86.0% | 82.2% |
| 3381618 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 43.0 | 3.34e-01 | 98.0% | 40.8% |
| 3912125 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.52 | 39.0 | 3.39e-01 | 98.0% | 48.0% |
| 3701631 | 220.1.1.200 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_30 | 0.52 | 45.0 | 3.40e-01 | 98.0% | 45.6% |
| 3782077 | 223.2.1.8 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin | 0.52 | 46.0 | 3.28e-01 | 100.0% | 35.5% |
| 3470076 | 861.1.1.0 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein | 0.51 | 43.0 | 3.23e-01 | 100.0% | 73.6% |
| 3242490 | 109.21.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 | 0.51 | 47.0 | 2.60e-01 | 100.0% | 9.3% |
| 3512228 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.50 | 38.0 | 3.90e-01 | 88.0% | 86.0% |