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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00213
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00213
Identity
- Kingdom:
- phage
Quality
62.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-71
D2
medium
residues 123-174
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.76 | 55.0 | 5.23e-01 | 76.9% | 68.9% |
| 2rgnB01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.67 | 51.0 | 3.39e-01 | 82.7% | 21.1% |
| 1zwkA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.62 | 43.0 | 2.97e-01 | 73.1% | 87.0% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 49.0 | 3.28e-01 | 90.4% | 22.7% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 45.0 | 3.56e-01 | 86.5% | 95.8% |
| 1lkvX02 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.58 | 46.0 | 3.55e-01 | 94.2% | 66.7% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 43.0 | 3.48e-01 | 92.3% | 74.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959589 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.74 | 61.0 | 5.69e-01 | 92.3% | 80.0% |
| 3961186 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.72 | 63.0 | 5.11e-01 | 100.0% | 58.0% |
| 4946932 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 53.0 | 4.99e-01 | 82.7% | 66.2% |
| 4076354 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.71 | 55.0 | 4.66e-01 | 100.0% | 49.5% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.68 | 58.0 | 5.44e-01 | 98.1% | 81.5% |
| 4374413 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.67 | 52.0 | 4.67e-01 | 100.0% | 58.7% |
| 3260418 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.65 | 53.0 | 5.00e-01 | 96.2% | 75.4% |
| 3287685 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.61 | 51.0 | 4.27e-01 | 98.1% | 52.6% |
| 3507343 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 51.0 | 3.54e-01 | 100.0% | 49.7% |